EY684799

Overview
NameEY684799
Unique NameEY684799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.548e-19
Identity = 44/84 (52.38%), Postives = 66/84 (78.57%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            L RDQ+++IV+LQ+ R++KR+ADRK+ +++++AAI  +   GYDP YGARP+KR IQ  + N LA+G+L+G+F D DTI +D E
Sbjct:  774 LRRDQLAAIVKLQIARLEKRLADRKITLKLSEAAIDYIVEAGYDPVYGARPLKRAIQNELVNPLARGLLKGDFNDGDTIFVDIE 857          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.883e-19
Identity = 44/85 (51.76%), Postives = 64/85 (75.29%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            PLD+ QI SI R+QL  ++KR+A+R +K+ + D A++LLG++G+DP YGARP+KR IQ  VEN LA+ IL G++   DT+ + TE
Sbjct:  768 PLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDPALELLGNVGFDPVYGARPLKRAIQSQVENPLAQQILSGQYTSGDTVRVRTE 852          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.311e-18
Identity = 42/94 (44.68%), Postives = 67/94 (71.28%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTEVTAFYNGQLP 289
            LD+ ++  IV+LQ++R++ R+ DRK+ ++++D A+  L  +GYDP +GARP+KR IQ+ +E ++AK ILRGEF D DTI +D +       +LP
Sbjct:  773 LDKKELRQIVQLQVERLKARLDDRKISLRLSDVALDFLAEVGYDPVFGARPLKRAIQRELETQIAKAILRGEFNDGDTIFVDVQNERLSFSRLP 866          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.813e-18
Identity = 42/82 (51.22%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            L +DQ+  IV+LQ+ R+Q+R++DR + + +T+ AI  L  +GYDP YGARP+KR IQ+ +E  +AK ILRG+F D DTI++D
Sbjct:  772 LRKDQLRQIVQLQVQRLQQRLSDRHITLSLTEKAIDFLAEVGYDPVYGARPLKRAIQKQLETPIAKAILRGDFFDGDTILVD 853          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.980e-18
Identity = 42/80 (52.50%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTI 244
            PLD+ QI SI R+QL  ++KR+A+R +K+ + DAA+++LGS+G+DP YGARP+KR IQ  VEN LA+ IL G++   D++
Sbjct:  768 PLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDAALEVLGSVGFDPVYGARPLKRAIQSQVENPLAQQILSGQYLSGDSV 847          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 8.495e-18
Identity = 42/84 (50.00%), Postives = 62/84 (73.81%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            L +DQ+  IVR+QL R+++R++DRK+ + ++  AI  L  +G+DP YGARP+KRVIQ+ +E  +AK ILRG+F D DTI +  E
Sbjct:  773 LRKDQLQQIVRIQLHRLEERLSDRKLSLSMSPEAIDFLVEIGFDPVYGARPLKRVIQRELETAIAKAILRGQFSDGDTIQVAVE 856          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.472e-17
Identity = 37/82 (45.12%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    8 LDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            L + ++ SIV++Q+  +  R+ ++K+ +++TD A+  L ++GYDP YGARP+KR +Q+Y+E  +AKGILRG++K  +TIV+D
Sbjct:  773 LQKSELRSIVQIQIQSLATRLEEQKLTLKLTDKALDFLAAVGYDPVYGARPLKRAVQKYLETAIAKGILRGDYKPGETIVVD 854          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.392e-17
Identity = 40/85 (47.06%), Postives = 61/85 (71.76%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            PLD+ QI  I R+QL  ++KR+A+ ++K+ + D A++LLG++G+DP YGARP+KR IQ  +EN LA+ IL G F   DT+ +  +
Sbjct:  768 PLDKAQIKQIARIQLRGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENALAQQILAGAFVSGDTVQVGVD 852          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.092e-16
Identity = 37/83 (44.58%), Postives = 64/83 (77.11%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVID 253
            PL ++Q++SIV +Q+ ++ +R++DR++ ++V+DAA   L   GYDP YGARP++R+IQQ + ++LAK +L GE +D D +++D
Sbjct:  756 PLSQEQLASIVEIQISQLAERLSDRRLTLRVSDAAKLWLAERGYDPAYGARPLRRLIQQAIGDQLAKELLAGEIRDGDRVLVD 838          
BLAST of EY684799 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.661e-16
Identity = 39/85 (45.88%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    5 PLDRDQISSIVRLQLDRVQKRIADRKMKMQVTDAAIQLLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGEFKDEDTIVIDTE 259
            PLD+ QI  I R+QL  ++KR+A+ ++K+ + D A++LLG++G+DP YGARP+KR IQ  +EN LA+ IL   F   DT+ +  +
Sbjct:  768 PLDKAQIKQIARIQLQGLEKRLAESELKLDLDDRALELLGNVGFDPVYGARPLKRAIQSQLENPLAQQILAEAFVSGDTVQVGVD 852          
The following BLAST results are available for this feature:
BLAST of EY684799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
CLPB_GLOVI1.548e-1952.38Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_XANCP5.883e-1951.76Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB2_ANASP1.311e-1844.68Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB1_THEEB3.813e-1851.22Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB_XANAC4.980e-1852.50Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB1_SYNE78.495e-1850.00Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB2_SYNY32.472e-1745.12Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB_XYLFT9.392e-1747.06Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_COREF2.092e-1644.58Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_XYLFA4.661e-1645.88Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-G10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684799 ID=EY684799; Name=EY684799; organism=Citrus sinensis; type=EST; length=917bp
TCCACCACTGGACCGTGACCAGATAAGCAGTATTGTGAGGTTACAGTTGG
ATCGGGTGCAGAAGAGGATTGCAGACCGGAAGATGAAAATGCAAGTGACC
GATGCAGCTATTCAGCTCCTTGGGAGTCTTGGGTATGACCCCAACTATGG
TGCAAGGCCGGTCAAGAGAGTGATTCAGCAGTACGTTGAAAATGAGCTTG
CCAAGGGCATTCTGAGAGGGGAGTTCAAGGATGAAGACACAATTGTAATA
GACACTGAAGTTACAGCATTTTACAATGGCCAGCTTCCCCAGCAAAAGCT
AGGCTTCACGAGAATTGATACCAGATCGGATGCTCCTGCCTGAGATAATC
ACAACCCTTTCTCACACAGCCCACAAGCCCCGCAGCGATGCGGCGACGGG
CGGGGAACACATAACTACGACACCAACACCCGACCAAAAACGAACCATAA
GCAAAGCAAACAGGACACACGAACGCGAGAACCCGCGAAGCCAACTGCAC
GCACAAGCGGAGGCGAACACGCACCGCCGCACACGGAGCGCGGCCACCCC
GCCACCGACAACCCGCCGACGACGACCACCCCACCCACAAACACCGCCCA
ACCACACAAGAACAAAAAACAAAAACAACCAACAAACCACACACCAACCA
AGGGACCCCTCCAGAGACAATCATACTCCGGACACAGACCGCACCAACAC
GTCACGCAGCCCCACACACGACCAAAGACGACCACACACGCGCACCCCAC
CCAACTCCAATCAACACCGCCAACGACGCACGCCGCAGGGAACAACACAA
CACGGCAAACCCACCAACAACCCCCGACCACACACGCCGCCCTCGGACCA
CAGCACGAAAAAACAAAACACCACCCACGCCGCCCCCCCAAACACCACCC
TCGACAAACCAGACGCA
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