EY684762

Overview
NameEY684762
Unique NameEY684762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684762_ssr649 microsatellite EY684762_ssr649:649..660. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.264e-71
Identity = 139/176 (78.98%), Postives = 151/176 (85.80%), Query Frame = 2
Query:   77 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIQISDSIQPRSS*LRELQLRNQFHPNPVL 604
            MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDIS SRIAAWN DQLPIYEPGL+ VV QCRG+NLFFSTD+EKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA+VS S+KIVVEKSTVPVKTAEAIEKILTHNS+ I+      P         +++ F+P+ VL
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL-AEGTAIKDLFNPDRVL 175          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.113e-70
Identity = 136/176 (77.27%), Postives = 150/176 (85.23%), Query Frame = 2
Query:   77 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIQISDSIQPRSS*LRELQLRNQFHPNPVL 604
            MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RI AWN D LPIYEPGL+DVV QCRG+NLFFSTD+EKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+KIVVEKSTVPVKTAEAIEKILTHNS+ I+      P         +++ F+P+ VL
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFL-AEGTAIKDLFNPDRVL 175          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 3.644e-70
Identity = 131/149 (87.92%), Postives = 139/149 (93.29%), Query Frame = 2
Query:   77 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIQ 523
            MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RI AWN DQLPIYEPGL+D+V QCRG+NLFFSTD+EKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAARMIA+VS S+KIVVEKSTVPVKTAEAIEKIL HNS+ I+
Sbjct:    1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQCRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNSKGIK 149          

HSP 2 Score: 23.8682 bits (50), Expect = 3.644e-70
Identity = 17/42 (40.48%), Postives = 21/42 (50.00%), Query Frame = 1
Query:  544 PQFLAEGTATQEPIPP*P---GSR--PEGKKPHHTHPDAHTN 654
            P+FLAEGTA  +   P     G R  PEG K   T  + + N
Sbjct:  156 PEFLAEGTAIADLFNPDRVLIGGRETPEGFKAVQTLKEVYAN 197          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.520e-51
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 2
Query:   80 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR 514
            +K+CCIGAGYVGGPT AV+ALKCP I + +VD S  RIA WN D+LPIYEPGL++VV +CR  NLFFSTDIE  + EAD++F+SVNTPTKT G G G+AADL Y ESAARMIA ++ SNKIVVEKSTVPV+ AE+I  IL  N +
Sbjct:    1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQK 145          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 6.901e-50
Identity = 94/144 (65.28%), Postives = 113/144 (78.47%), Query Frame = 2
Query:   83 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR 514
            KICCIGAGYVGGPT +VIA  CPKI+V VVD++ +RI AWN D LPIYEPGL++VV  CRGRNLFFST I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KIV EKSTVPV+ AE+I +I   N++
Sbjct:    6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCRGRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTK 149          

HSP 2 Score: 23.483 bits (49), Expect = 6.901e-50
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  517 NPNIRFYPTPQFLAEGTATQE 579
            N +++    P+FLAEGTA ++
Sbjct:  151 NLDLQVLSNPEFLAEGTAIKD 171          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.749e-49
Identity = 92/144 (63.89%), Postives = 112/144 (77.78%), Query Frame = 2
Query:   83 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR 514
            KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CRG+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KIV EKSTVPV+ AE+I +I   N++
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTK 149          

HSP 2 Score: 25.409 bits (54), Expect = 5.749e-49
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  517 NPNIRFYPTPQFLAEGTATQE 579
            N N++    P+FLAEGTA ++
Sbjct:  151 NLNLQVLSNPEFLAEGTAIKD 171          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.767e-49
Identity = 91/144 (63.19%), Postives = 112/144 (77.78%), Query Frame = 2
Query:   83 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR 514
            KICCIGAGYVGGPT +VIA  CP+I V VVD++ +RI AWN   LPIYEPGL++VV  CRG+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KIV EKSTVPV+ AE+I +I   N++
Sbjct:    6 KICCIGAGYVGGPTCSVIARMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTK 149          

HSP 2 Score: 25.409 bits (54), Expect = 9.767e-49
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  517 NPNIRFYPTPQFLAEGTATQE 579
            N N++    P+FLAEGTA ++
Sbjct:  151 NLNLQVLSNPEFLAEGTAIKD 171          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.273e-48
Identity = 91/144 (63.19%), Postives = 112/144 (77.78%), Query Frame = 2
Query:   83 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR 514
            KICCIGAGYVGGPT +VIA  CP+I V VVD++ +RI AWN   LPIYEPGL++VV  CRG+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KIV EKSTVPV+ AE+I +I   N++
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTK 149          

HSP 2 Score: 25.409 bits (54), Expect = 1.273e-48
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  517 NPNIRFYPTPQFLAEGTATQE 579
            N N++    P+FLAEGTA ++
Sbjct:  151 NLNLQVLSNPEFLAEGTAIKD 171          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.659e-48
Identity = 92/144 (63.89%), Postives = 112/144 (77.78%), Query Frame = 2
Query:   83 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR 514
            KICCIGAGYVGGPT +VIA  CP+I V VVDI+ SRI AWN   LPIYEPGL++VV  CRG+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S+  KIV EKSTVPV+ AE+I +I   N++
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAESIRRIFDANTK 149          

HSP 2 Score: 25.409 bits (54), Expect = 1.659e-48
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  517 NPNIRFYPTPQFLAEGTATQE 579
            N N++    P+FLAEGTA ++
Sbjct:  151 NLNLQVLSNPEFLAEGTAIKD 171          
BLAST of EY684762 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.382e-47
Identity = 91/144 (63.19%), Postives = 111/144 (77.08%), Query Frame = 2
Query:   83 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR 514
            KICCIGAGYVGGPT +VIA   P+I V VVD++ SRI AWN   LPIYEPGL++VV  CRG+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KIV EKSTVPV+ AE+I +I   N++
Sbjct:    6 KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTK 149          

HSP 2 Score: 25.409 bits (54), Expect = 1.382e-47
Identity = 10/21 (47.62%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  517 NPNIRFYPTPQFLAEGTATQE 579
            N N++    P+FLAEGTA ++
Sbjct:  151 NLNLQVLSNPEFLAEGTAIKD 171          
The following BLAST results are available for this feature:
BLAST of EY684762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UGDH_SOYBN1.264e-7178.98UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH3.113e-7077.27Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH3.644e-7087.92Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME5.520e-5167.59UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CHICK6.901e-5065.28UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_HUMAN5.749e-4963.89UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_RAT9.767e-4963.19UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_MOUSE1.273e-4863.19UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_BOVIN1.659e-4863.89UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_PONAB1.382e-4763.19UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-C12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684762 ID=EY684762; Name=EY684762; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGAATAAATTGTTTTAAACTAATGTAACGGTCTTTTTATTT
CAGGTTCTATATAAACGACCAAAAAAATGGTGAAGATCTGTTGCATTGGA
GCTGGCTATGTGGGGGGTCCAACCATGGCGGTGATTGCACTCAAGTGCCC
CAAAATCGAAGTTGCTGTTGTTGACATCTCTGTTTCTCGCATTGCAGCCT
GGAACGGCGACCAGCTTCCGATTTACGAGCCTGGTCTCGAAGACGTGGTG
ACGCAGTGCAGAGGCAGGAACCTCTTCTTCAGCACTGATATTGAGAAGCA
TGTGGCTGAGGCGGACATTGTGTTTGTTTCTGTTAACACTCCAACAAAAA
CTCAAGGCCTCGGAGCTGGGAAAGCTGCAGACCTTACATACTGGGAGAGC
GCAGCCAGGATGATTGCCAACGTATCCAACTCCAACAAGATTGTTGTTGA
GAAATCTACAGTGCCGGTGAAAACAGCTGAAGCAATTGAAAAGATCCTGA
CTCACAATAGCCGGGAAATCCAAATATCAGATTCTATCCAACCCCGCAGT
TCTTAGCTGAGGGAACTGCAACTCAGGAACCAATTCCACCCTAACCCGGT
TCTAGACCGGAGGGAAAGAAACCACACCACACCCACCCAGACGCACACAC
AAACAAACAACAGCTCCAACCCCATCAGGAATTCCAGACCACGAGAACCA
GCCACGACCACACCCTGAGACCCACTAACCGATACAACCAAAGGCACACC
ACCGCACAACAAGCGCGGCAAGAATCTCACGCCGCACACCACGAGCAATA
GCCCAGCAAAGAACGCCCGCCGCCCGCCACCCCACCGCCCCCCGTCCTAC
CCGGAACCCCAAATCGCGAACACACTGTGACCGAAAC
back to top