EY684758

Overview
NameEY684758
Unique NameEY684758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684758 vs. ExPASy Swiss-Prot
Match: SCL6_ARATH (Scarecrow-like protein 6 OS=Arabidopsis thaliana GN=SLC6 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.317e-43
Identity = 85/139 (61.15%), Postives = 106/139 (76.26%), Query Frame = 3
Query:    6 LSPKIVVSADRGCDKSDLPFPEHILHALQSYINLLESLDAVNVMPDALNKIERFLLQPRIESVVLGRLRGPGRMPM--WKTVFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQASLVLCWQQRELISASAWRC 416
            LSP I+V +DRGC+++DLPF + + H+L S+  L ESLDAVN   DA+ KIERFL+QP IE +VL R R P   PM  W+ +F   GFSPVT SNFTE+QAEC+V+RTPVRGFHVEK+  SL+LCWQ+ EL+  SAWRC
Sbjct:  418 LSPTIIVCSDRGCERTDLPFSQQLAHSLHSHTALFESLDAVNANLDAMQKIERFLIQPEIEKLVLDRSR-PIERPMMTWQAMFLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTELVGVSAWRC 555          
BLAST of EY684758 vs. ExPASy Swiss-Prot
Match: SCL27_ARATH (Scarecrow-like protein 27 OS=Arabidopsis thaliana GN=SCL27 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.651e-39
Identity = 75/138 (54.35%), Postives = 101/138 (73.19%), Query Frame = 3
Query:    3 QLSPKIVVSADRGCDKSDLPFPEHILHALQSYINLLESLDAVNVMPDALNKIERFLLQPRIESVVLGRLRGPGRMPMWKTVFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQASLVLCWQQRELISASAWRC 416
            QLSP IVV +DRGCD++D PFP  ++H+LQ + +LLESLDA     D+   IERF +QP IE +++ R R   R P W+ +F   GFSP + S   E QAEC+++R PVRGFHVEKRQ+SLV+CWQ++EL++ SAW+C
Sbjct:  505 QLSPNIVVCSDRGCDRNDAPFPNAVIHSLQYHTSLLESLDANQNQDDS--SIERFWVQPSIEKLLMKRHRWIERSPPWRILFTQCGFSPASLSQMAEAQAECLLQRNPVRGFHVEKRQSSLVMCWQRKELVTVSAWKC 640          
BLAST of EY684758 vs. ExPASy Swiss-Prot
Match: SCL22_ARATH (Scarecrow-like protein 22 OS=Arabidopsis thaliana GN=SCL22 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.033e-35
Identity = 72/143 (50.35%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    3 QLSPKIVVSADRGCDKS-DLPFPEHILHALQSYINLLESLDAVNVM-PDALNKIERFLLQPRIESVVLGRLRGPGRMPMWKTVFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQA---SLVLCWQQRELISASAWRC 416
            Q+SP +VV +DR CD++ D PFP  +++ALQ Y +LLESLD+ N+   +A   IERF +QP I+ ++  R R   R P W+++F   GF+PVT S   ETQAE +++R P+RGFH+EKRQ+   SLVLCWQ++EL++ SAW+C
Sbjct:  481 QISPNVVVCSDRSCDRNNDAPFPNGVINALQYYTSLLESLDSGNLNNAEAATSIERFCVQPSIQKLLTNRYRWMERSPPWRSLFGQCGFTPVTLSQTAETQAEYLLQRNPMRGFHLEKRQSSSPSLVLCWQRKELVTVSAWKC 623          
BLAST of EY684758 vs. ExPASy Swiss-Prot
Match: SCL15_ARATH (Scarecrow-like protein 15 OS=Arabidopsis thaliana GN=SCL15 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.756e-20
Identity = 60/143 (41.96%), Postives = 82/143 (57.34%), Query Frame = 3
Query:    3 QLSPKIVVSAD-RGCDK--SDLPFPEHILHALQSYINLLESLDAVNVMPDALNKI-ERFLLQPRIESVV--LGRLRGPGRMPMWKTVFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKRQASLVLCWQQRELISASAWR 413
            ++SPK+VV  D  G  +      F    + AL+ Y  +LESLDA     D + KI E F+L+P+I + V      R  G M  W+  F +AG  P+  S F + QAEC++++  VRGFHV KRQ  LVLCW  R L++ SAWR
Sbjct:  344 RVSPKVVVFVDSEGWTEIAGSGSFRREFVSALEFYTMVLESLDAAAPPGDLVKKIVEAFVLRPKISAAVETAADRRHTGEMT-WREAFCAAGMRPIQQSQFADFQAECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWR 485          
The following BLAST results are available for this feature:
BLAST of EY684758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SCL6_ARATH2.317e-4361.15Scarecrow-like protein 6 OS=Arabidopsis thaliana G... [more]
SCL27_ARATH2.651e-3954.35Scarecrow-like protein 27 OS=Arabidopsis thaliana ... [more]
SCL22_ARATH3.033e-3550.35Scarecrow-like protein 22 OS=Arabidopsis thaliana ... [more]
SCL15_ARATH2.756e-2041.96Scarecrow-like protein 15 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-C08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684758 ID=EY684758; Name=EY684758; organism=Citrus sinensis; type=EST; length=852bp
AGCAGCTTTCGCCAAAAATTGTGGTATCAGCAGATAGAGGATGTGATAAA
AGTGACTTGCCTTTCCCGGAACATATTCTTCATGCCCTCCAATCATATAT
AAACCTACTGGAATCGCTTGATGCTGTTAACGTGATGCCTGATGCTCTCA
ATAAGATTGAGAGGTTCCTTCTTCAGCCTAGAATTGAAAGTGTGGTATTG
GGGCGGCTCAGGGGCCCGGGCAGAATGCCAATGTGGAAAACAGTCTTTGC
ATCGGCTGGGTTTTCCCCCGTAACATTCAGTAACTTCACCGAAACTCAGG
CAGAATGTGTGGTGAAGAGGACTCCAGTGAGGGGCTTTCATGTTGAAAAG
CGCCAGGCCTCACTTGTCCTCTGTTGGCAGCAGCGGGAACTTATCTCTGC
ATCAGCTTGGAGGTGCTGAGGTGTAAATATTTGGCAAGCAGGGGGTTGTT
TTTTAGCAACATACTCAACTATAAAGGGTCGAAATTGATATCGCTTACGC
AGCAACAGACACAATCGCACAAACCTGGATGACAAAGGAGACAAAATCTG
AGGCACACAATATAGAACAGACCCCGGATACGCGAAAAAATCACAAAAAA
CAGCGGAAAAAGGACGGAGAGCCAAGCAAAAAGGCCAAAACAATAAAAAC
CGTACACCCAAAAAGACACGCGAAACGAGGATCACGGACCGANCCCAAAA
GCCACACCCCACATCCCACCCCCCCCCCAGAAAGACAGACACCAGCCACA
CAGACACGGGGAACAAAGACCACGAGACATAAGCACCAGAACACAAGAGA
GAAGAACAGAAAAACCCAACCGCGCAAGACAAAAATCAAGAAGCACAGAC
CC
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