EY684748

Overview
NameEY684748
Unique NameEY684748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684748_ssr332 microsatellite EY684748_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY684748 vs. ExPASy Swiss-Prot
Match: YQ020_HUMAN (Putative endonuclease FLJ39025 OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.406e-16
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  352 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYP 579
            L+ +GGVD+SF K D   AC  +VVL    L++VYE+  ++ L  PYV GFLAFRE P LL L+  ++++     P
Sbjct:   45 LQRVGGVDVSFVKGDSVRACASLVVLSFPELEVVYEESRMVSLTAPYVSGFLAFREVPFLLELVQQLREKEPGLMP 120

HSP 2 Score: 35.4242 bits (80), Expect = 2.406e-16
Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = 2 
Query:  578 PQVLMVDGNGLLHPRGFWV 634
            PQVL+VDGNG+LH RGF V
Sbjct:  120 PQVLLVDGNGVLHHRGFGV 138
The following BLAST results are available for this feature:
BLAST of EY684748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YQ020_HUMAN2.406e-1644.74Putative endonuclease FLJ39025 OS=Homo sapiens PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684748 ID=EY684748; Name=EY684748; organism=Citrus sinensis; type=EST; length=901bp
CTTTATGTTTCCACTGTACAATCCAGAAACAATTTTTTTTTTTTTTTTAA
AAGGAAAAGAATTCAGGAGTGCAGCAGCCACATCATCGAAGAGAATTTCA
TTCAATCCCCGAGCAAATGTCTTCTTGTTACAGATCGTACATGGAAAATT
ATTGTGAAGAAGAAAGGGAAGCACTAGCATCGCCCGATCCTGCTGCTCAA
GCTCAGCTCAATCAGTGGACAGATTGGCAATGGTAAATTCAGGATTCAGG
ACGAGCTAAAAAAGAGATTAATAACTGAAGATTTTTTTACTTGGAATTTA
CCGAACTCCACAACCACAAACACGAGCACAAAAGAAGAAGAAGAGGTGTT
GCTGAAGTATATTGGTGGTGTTGATATGAGCTTCTCAAAGGAAGATCCAT
CAATTGCATGTGGTTGCATTGTTGTGTTGGACCTCCAAACTCTGCAAATA
GTCTATGAGGATTATTCTCTTCTCAGGCTTCAAGTGCCTTATGTCCCTGG
TTTCCTTGCATTTCGCGAGGCTCCGGTTCTTTTATCGCTTCTGGATAACA
TGAAAAAGAGGGCTAACCATTTTTACCCCACAGGTATTAATGGTTGATGG
CAATGGACTACTCCATCCTCGAGGGTTTTGGGTTGGGCAGTCACATTCGG
TGTTCTGGCGAATCTTAACTACAATTGGGGGTTGGGAACGAATGGGAAAA
ATTGACTACACTGCACCATGGGGGAAGGGTTTAAACAACATTTTCGGGAG
AAAAGGCGACTAATTTGGATGGAAAAAAAAAAAAATAAAGGAAAAAAATT
ATTCCTATTTGAAGGGGAAAGCTCCAGGAGACCACCGTGGGAGAGCGGGG
GAAGGGAGAAATCAACTCCCGCACAACCGGATGGAAGCCTGAGTTACTGT
T
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