EY684742

Overview
NameEY684742
Unique NameEY684742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684742_ssr30 microsatellite EY684742_ssr30:30..47. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684742_ssr571 microsatellite EY684742_ssr571:571..582. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_HEVBR (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis GN=TCTP PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 54/70 (77.14%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDSFPYKE  NGILWEVEGKWVVQGAVDVDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGVDDQAVKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_CUCMA (Translationally-controlled tumor protein homolog OS=Cucurbita maxima GN=TCTP PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.347e-23
Identity = 53/70 (75.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDSFPYKE ENG++WEVEGKWVVQGAVDVDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKELENGMIWEVEGKWVVQGAVDVDIGANPSAEGDGEDEGVDDQAVKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_ORYSJ (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica GN=TCTP PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.709e-23
Identity = 52/70 (74.29%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDSFPY+E ENGILWEV+GKWVVQGA+DVDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGVDDQAVKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_SOLLC (Translationally-controlled tumor protein homolog OS=Solanum lycopersicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.661e-22
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDSFPYKE ENG+LWEV+GKWVVQGAVDV+IGANPS             AV+VVD+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEVENGVLWEVQGKWVVQGAVDVNIGANPSAEGGCEDEGVDDQAVRVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_SOLTU (Translationally-controlled tumor protein homolog OS=Solanum tuberosum GN=TCTP PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDSFPYKE +NG+LWEV+GKWVVQGAVDV+IGANPS             AVKVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGVDDQAVKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_ELAGV (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.700e-22
Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDSFPYKE  NG+LWEVEGKWV+QGAV+VDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGVDDQAVKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.312e-22
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDL++GDELLSDSFPYKE ENG++WEVEGKWVV+GAVDVDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDLVSGDELLSDSFPYKEIENGMIWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.077e-21
Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDSF YKE ENG+LWEVEGKWVV+GAVDVDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGVDDAAVKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.091e-21
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQD L+GDELLSDSFPY+E ENG+LWEV+G WVVQGAVDVDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGDDEGVDDQAVKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.091e-21
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQD L+GDELLSDSFPY+E ENG+LWEV+G WVVQGAVDVDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAVDVDIGANPSAEGGGEDEGVDDQAVKVVDI 70          
The following BLAST results are available for this feature:
BLAST of EY684742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_HEVBR3.347e-2377.14Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCMA3.347e-2375.71Translationally-controlled tumor protein homolog O... [more]
TCTP_ORYSJ5.709e-2374.29Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLLC1.661e-2272.86Translationally-controlled tumor protein homolog O... [more]
TCTP_SOLTU3.700e-2272.86Translationally-controlled tumor protein homolog O... [more]
TCTP_ELAGV3.700e-2272.86Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME6.312e-2271.43Translationally-controlled tumor protein homolog O... [more]
TCTP_SOYBN1.077e-2174.29Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT4.091e-2170.00Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU4.091e-2170.00Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-A12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684742 ID=EY684742; Name=EY684742; organism=Citrus sinensis; type=EST; length=825bp
CCACGCGTCCGCGCTCTCTCACCGCTGCGTCTCTCTCTCTCTCTCTCCAG
TTTTCTCCGTTGATTATTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAA
TCATGTTGGTCTATCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCGAC
TCTTTTCCCTACAAGGAAACTGAGAATGGGATTCTGTGGGAAGTTGAGGG
AAAGTGGGTTGTACAAGGAGCCGTTGATGTTGACATTGGTGCAAATCCTT
CTGCCGAAGGAGCTGATGAGGATGAGGGTGCTGATGACCACGCCGTGAAA
GTGGTCGACGTCCCCCACCACTCCACGCCACCCGGCCACGCGTTCTACCG
ACACAAGGGACATGACAGAAACAAGACCGAAGTTGATAGCAACCACCCCC
CACGCGCGGCAGAGCAAACAAAACAGCCACCCCCCCAACCACCCTTAATG
AGCCCAAAACAACAGCCACGATCCAACTCCCGGCGAACCTACTCACGCAA
CCCCTACCGCTCCCACCCTACGAGCGCAACACATACAATAGCACACCCAA
GAACAACCACCAACCACACAAACAACAACAACCACGACAACACGCACATC
CCAGCCTCCATAGCACACGCCATGCCGCAGTGCCGGACCCCCACCCCACC
CAATACCAGCCCTAGGCCAGCCGCCGCACACCAAACCCACAGACCACAGA
AGCCGCAAAAACCAAGTAGACCCCACGAACAGCACTACCGAGGTCAACGC
CAGAAGCACCCGGTAGAAACACTCCACGAGACCCCAGACCACACGCACGA
ACCGAGAGCCGCCCGGGACCCGCTA
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