EY684741

Overview
NameEY684741
Unique NameEY684741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684741_ssr458 microsatellite EY684741_ssr458:458..469. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684741_ssr61 microsatellite EY684741_ssr61:61..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY684741 vs. ExPASy Swiss-Prot
Match: SNP33_ARATH (SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.738e-30
Identity = 71/119 (59.66%), Postives = 89/119 (74.79%), Query Frame = 3 
Query:  267 MFGLKKSPLRVGRHNSVDPGHQVSSRSNPFDSDDELDNKQTLKPSKRTSSEPNLTTSKVSTNPFDDDDIKENTAVSS-YSLTSAARNKYRNDFRDSGGLENQSVQELEDYAVYKAEDTT 620
            MFGL+KSP  + +HNSVD     SS+ NPFDSDDE DNK TL PSKRT+SEP+L      TNPF  + +++  + SS  SL S ++ +Y+N+FRDSGG+ENQSVQELE YAVYKAE+TT
Sbjct:    1 MFGLRKSPANLPKHNSVD---LKSSKPNPFDSDDESDNKHTLNPSKRTTSEPSLADM---TNPFGGERVQKGDSSSSKQSLFSNSKYQYKNNFRDSGGIENQSVQELEGYAVYKAEETT 113
The following BLAST results are available for this feature:
BLAST of EY684741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SNP33_ARATH3.738e-3059.66SNAP25 homologous protein SNAP33 OS=Arabidopsis th... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-A11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684741 ID=EY684741; Name=EY684741; organism=Citrus sinensis; type=EST; length=834bp
CAGTTCCTTTCATCCTTGTTCCAATTTCAGAGAACTCGCTCCACGCGATT
TATATCCGTGGCTCGCTCGCTCGCTCTTTCTCGTTTAGAGTTTTAAACCC
ACCAAATCTTTCTTCACAACGTAAAGCTCTTTCTTCGCAAAGTTTCATTT
TGACTAATTCCTTGTGAGATTCTTGCGCTCTTGCAAGATTTTCTGCAACA
TTTTCTCAGGAACATTGATTGATAGATCGATTTCTCTTCAGTTTGAATAA
TAGCTCTGCTTTAAGAATGTTTGGCTTAAAGAAATCTCCTTTAAGGGTTG
GTAGGCATAATTCTGTTGACCCCGGACACCAGGTTTCTTCTCGGTCCAAC
CCGTTTGATTCTGACGATGAGTTGGATAATAAGCAGACTCTTAAACCCTC
AAAAAGGACTTCTTCTGAACCCAACCTAACTACATCAAAAGTTAGTACTA
ATCCTTTTGATGATGATGATATAAAAGAGAACACTGCAGTGTCCTCATAT
TCCCTTACTTCAGCTGCGAGAAACAAATATAGGAATGATTTTCGTGACTC
TGGTGGATTAGAGAACCAGTCTGTGCAAGAATTGGAGGATTATGCTGTTT
ACAAGGCAGAGGACACTACAAAAGCAAGTGCATGGCTGGCCTGAAGATTG
TTGAAGAAATTAAAGAGGGTGGCACTAAGAAATTTGGTAAGCTTTGCCCC
AGCAGGGTGAACAAATTAACCCGGAACCCACTTAACTGCCTGCCCACATT
CGATTCCCATCCTTTAGCCGGGGCGAAAAAGCTTTTAGGAAAGCCCACGG
GTGGATGGTGCTCTTAGGCGTGACACATGTGGAA
back to top