EY684734

Overview
NameEY684734
Unique NameEY684734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684734_ssr504 microsatellite EY684734_ssr504:504..515. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684734 vs. ExPASy Swiss-Prot
Match: CAMK1_ORYSJ (Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica GN=CAMK1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.078e-62
Identity = 114/154 (74.03%), Postives = 135/154 (87.66%), Query Frame = 3
Query:   21 KTLTVPQLAYLREQFTLLAPNKNGFISMQNYKMAVSKNSTDAMKDSRVLDYVNMIGSLQYRKLDFEEFCAAAISVHQLEGMETWEQHARHAYDLFDKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQK 482
            KTLT  Q+ YLREQF L+ PNK+  I++QN K A+ KNST+AMKDSRV+D+VN I ++QYRKLDFEEF AAAISV+Q+EG+ETWEQHAR AY+ FDK+GNRPI+I+ELASELGL PSVP+HVVLQDWIRH DGKLSFLGF++LLHGVSSRT  K
Sbjct:  446 KTLTTDQIYYLREQFELIGPNKSDLITLQNLKTALMKNSTNAMKDSRVVDFVNTISNIQYRKLDFEEFSAAAISVYQMEGLETWEQHARQAYEFFDKEGNRPIVIDELASELGLGPSVPLHVVLQDWIRHPDGKLSFLGFMKLLHGVSSRTIPK 599          
BLAST of EY684734 vs. ExPASy Swiss-Prot
Match: CRK_DAUCA (CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 3.469e-61
Identity = 112/155 (72.26%), Postives = 132/155 (85.16%), Query Frame = 3
Query:   21 KTLTVPQLAYLREQFTLLAPNKNGFISMQNYKMAVSKNSTDAMKDSRVLDYVNMIGSLQYRKLDFEEFCAAAISVHQLEGMETWEQHARHAYDLFDKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA 485
            KTLTV +L YL+EQF LL P KNG IS++N K A+ +NSTDAMKDSRVLD +  + +LQYR++DFEEFCAAA+SVHQLE ++ WEQHAR AYDLF+KDGNR IMIEELASELGL PS+PVH VL DWIRH+DGKLSFLG+V+LLHGVS+R   KA
Sbjct:  447 KTLTVDELFYLKEQFVLLEPTKNGTISLENIKQALMRNSTDAMKDSRVLDLLVSLNALQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYDLFEKDGNRAIMIEELASELGLGPSIPVHAVLHDWIRHTDGKLSFLGYVKLLHGVSTRAIAKA 601          
BLAST of EY684734 vs. ExPASy Swiss-Prot
Match: CDPKG_ARATH (Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.354e-17
Identity = 58/152 (38.16%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   24 TLTVPQLAYLREQFTLLAPNKNGFISMQNYKMAVSKNSTDAMKDSRVLDYVNMIGSLQYRKLDFEEFCAAAISVHQLE--GMETWEQHARHAYDLFDKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRT 473
            TL   +LA LR+QF  +  +KNG IS++  + A++K+    +KD+RV + +  I S     +DF EF AAA+ V+QLE    E W+Q +R A++ FD DG+  I  EEL    GL  S  +  +L++    +DGK+S   F RLL   S ++
Sbjct:  407 TLDEEELADLRDQFDAIDVDKNGVISLEEMRQALAKDHPWKLKDARVAEILQAIDSNTDGFVDFGEFVAAALHVNQLEEHDSEKWQQRSRAAFEKFDIDGDGFITAEELRMHTGLKGS--IEPLLEEADIDNDGKISLQEFRRLLRTASIKS 556          
BLAST of EY684734 vs. ExPASy Swiss-Prot
Match: CDPKI_ARATH (Calcium-dependent protein kinase 18 OS=Arabidopsis thaliana GN=CPK18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 3
Query:   21 KTLTVPQLAYLREQFTLLAPNKNGFISMQNYKMAVSKNSTDAMKDSRVLDYVNMIGSLQYRKLDFEEFCAAAISVHQLE--GMETWEQHARHAYDLFDKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRT 473
            KT+   +L  LR+QF  +  +KNG IS++  + A++K+    +KD+RV + +    S     +DF EF  AA+ V+QLE    E W+Q +R A+D FD DG+  I  EEL  + GL  S  +  +L++     DG++S   F RLL   S ++
Sbjct:  369 KTINEDELDDLRDQFDAIDIDKNGSISLEEMRQALAKDVPWKLKDARVAEILQANDSNTDGLVDFTEFVVAALHVNQLEEHDSEKWQQRSRAAFDKFDIDGDGFITPEELRLQTGLKGS--IEPLLEEADVDEDGRISINEFRRLLRSASLKS 519          
BLAST of EY684734 vs. ExPASy Swiss-Prot
Match: CDPKS_ARATH (Calcium-dependent protein kinase 28 OS=Arabidopsis thaliana GN=CPK28 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.203e-15
Identity = 56/149 (37.58%), Postives = 82/149 (55.03%), Query Frame = 3
Query:   24 TLTVPQLAYLREQFTLLAPNKNGFISMQNYKMAVSKNSTDAMKDSRVLDYVNMIGSLQYRKLDFEEFCAAAISVHQLE--GMETWEQHARHAYDLFDKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGVS 464
            TL   +++ LR+QF  +  +KNG IS++  + A++K+    +KDSRV + +  I S     +DF EF AAA+ VHQLE    E W+  +R A++ FD D +  I  EEL    GL  S  +  +L +     DGK+S   F RLL   S
Sbjct:  361 TLDEAEISDLRDQFDAIDVDKNGVISLEEMRQALAKDLPWKLKDSRVAEILEAIDSNTDGLVDFTEFVAAALHVHQLEEHDSEKWQLRSRAAFEKFDLDKDGYITPEELRMHTGLRGS--IDPLLDEADIDRDGKISLHEFRRLLRTAS 507          
The following BLAST results are available for this feature:
BLAST of EY684734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CAMK1_ORYSJ1.078e-6274.03Calcium/calmodulin-dependent serine/threonine-prot... [more]
CRK_DAUCA3.469e-6172.26CDPK-related protein kinase OS=Daucus carota GN=CR... [more]
CDPKG_ARATH2.354e-1738.16Calcium-dependent protein kinase 16 OS=Arabidopsis... [more]
CDPKI_ARATH9.890e-1635.95Calcium-dependent protein kinase 18 OS=Arabidopsis... [more]
CDPKS_ARATH2.203e-1537.58Calcium-dependent protein kinase 28 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-A04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684734 ID=EY684734; Name=EY684734; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGGGCTCTTGCAAGACATTAACAGTGCCTCAGCTTGCTTAC
CTCCGGGAACAATTTACGTTATTGGCGCCAAACAAGAATGGATTCATTTC
TATGCAGAACTATAAAATGGCAGTGTCGAAGAACTCCACTGACGCAATGA
AAGACTCACGGGTTTTAGACTATGTTAACATGATTGGTTCTCTCCAATAT
AGAAAACTTGATTTTGAAGAATTTTGTGCTGCTGCCATAAGTGTGCATCA
GCTGGAAGGAATGGAGACTTGGGAGCAACATGCAAGACATGCCTATGATT
TATTTGATAAAGATGGCAACAGACCCATAATGATTGAAGAACTTGCCTCG
GAGCTGGGACTCAGCCCATCAGTACCTGTTCACGTTGTTCTCCAAGACTG
GATAAGACACTCAGATGGCAAGCTTAGTTTCTTGGGGTTCGTTAGACTTC
TACATGGGGTCTCCTCTCGCACATTTCAGAAAGCTTGAACAATAGAAACT
GTTTTTCTTTCTTTCTCACTCCAACGTCTCAACGGGACAAAATGCATGCC
CGGGCTAGCTTGAGAGCTACCTGAATAAACTCGGCATTCCTCTCCATTTG
TCGAAAATGGGTACCCTCCACGATAAAAAAACGCGCCCCACCGCCCTGCA
TATGCCGGGGAAGCCATCGCCTGGGGCCACCATCACTCCGGACGGGTAAG
TAAAGGACGAACCCCCAGTACAAGCGGGAGCCAGAAGAGAAGATGAGACA
AGCGACACCGCTGACCATTGGACAGACGGCCCGGAGCCCTCGACAAACGG
AGATCCAACCCGCACGACGGCAGCCGAAAAAAAAAGNACACCACGAGGAA
CGAAAACCTCGAAGCACGAAAAACACACAGAAACACACCG
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