EY684728

Overview
NameEY684728
Unique NameEY684728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684728_ssr243 microsatellite EY684728_ssr243:243..252. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5607 contig Csv1_Contig5607:6..494. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY684728 vs. ExPASy Swiss-Prot
Match: SR54C_ARATH (Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 2 
Query:    2 MEGGSLPALSNLEDALKSEQKAPPGTAXXXXXXXXXXQFVDSASTRPSPRGFGGGN 169
            MEGGS+PALS LEDALK+EQKAPPGTA          +FV+SAS++P PRGFG GN
Sbjct:  509 MEGGSIPALSGLEDALKAEQKAPPGTARRKRKADSRKKFVESASSKPGPRGFGSGN 564
The following BLAST results are available for this feature:
BLAST of EY684728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SR54C_ARATH2.198e-1466.07Signal recognition particle 54 kDa protein, chloro... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-H05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684728 ID=EY684728; Name=EY684728; organism=Citrus sinensis; type=EST; length=487bp
AATGGAAGGTGGTTCACTTCCTGCACTGAGCAATCTTGAGGATGCCCTTA
AATCGGAACAGAAGGCTCCTCCTGGTACCGCTAGGAGGAAGAGAAGATCA
GAATCAAGGAGGCAGTTCGTTGACTCGGCATCAACAAGGCCAAGTCCTCG
TGGTTTTGGGGGTGGCAACTAGATCTTAAGTTTTGTCAGCTGCAAACAAC
ATACTGGCCTCCAGGCAAACAGTAAAGGAATCATAAATTCTTTCTCTCTC
TCGGATATCTCTACTCATGAAGTTAAGAGTTTTCAAGGTTGTTTGAGCTG
TAAGAATTCATCAATTAATGTAACCAAGCACGGAATTGCCACCTTGTGTC
TTTTAAGTACTGTAATTTTATGTATGTTAACCAATGTCACTTGCATTGAC
TTGTGAGATTGAAAATGAAAGCTAGAATGAAATGCGTTGTATGAAGAGCA
ATATGAACACATTAGATTCATGAAAAAAAAAAAAAAA
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