EY684721

Overview
NameEY684721
Unique NameEY684721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684721 vs. ExPASy Swiss-Prot
Match: ASD1_ARATH (Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.439e-44
Identity = 94/177 (53.11%), Postives = 120/177 (67.80%), Query Frame = 2
Query:   62 SDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFREXXXXXXXXXXXXXXXXXXXXXXXXXWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKMEGAD 592
            SD+V MASYAPLFVN NDR W PDAIVFNS+ LYGTPSYWVQ+FF E                         W++  N K ++RIK VN  +NS N++V V GL PN +++SGS KT LTS+N+ DENSF++P KVVP  +LLE A +DM VV+ P+SF+SFDLL+ES  ++M  +D
Sbjct:  495 SDIVEMASYAPLFVNTNDRRWNPDAIVFNSSHLYGTPSYWVQRFFAESSGATLLTSTLKGNSTSLVASAIS-WKN--NGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISD 668          
BLAST of EY684721 vs. ExPASy Swiss-Prot
Match: ASD2_ARATH (Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.227e-34
Identity = 83/169 (49.11%), Postives = 100/169 (59.17%), Query Frame = 2
Query:   62 SDVVAMASYAPLFVNANDRWWTPDAIVFNSAQLYGTPSYWVQQFFREXXXXXXXXXXXXXXXXXXXXXXXXXWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLE-NAAKDMDVVISPYSFTSFDLLRES 565
            SD+V M SYAPLFVN NDR W PDAIVFNS+ LYGTPSYWVQ FF E                              N K +++IK VN    SVNLKV+V GL     K  GS K  LTS+++ DENSF+ PN +VP  +LLE    +D+  V+ P+SF+SFDLL ES
Sbjct:  494 SDIVEMVSYAPLFVNTNDRRWIPDAIVFNSSHLYGTPSYWVQHFFTESSGATLLNSTLKGKTSSVEASAISF---QTNGKDYIQIKAVNFGEQSVNLKVAVTGL---MAKFYGSKKKVLTSASVMDENSFSNPNMIVPQESLLEMTEQEDLMFVLPPHSFSSFDLLTES 656          
The following BLAST results are available for this feature:
BLAST of EY684721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASD1_ARATH3.439e-4453.11Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thali... [more]
ASD2_ARATH3.227e-3449.11Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684721 ID=EY684721; Name=EY684721; organism=Citrus sinensis; type=EST; length=827bp
CGCAGTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGTCCTTATTGGG
CTGGACCATACAGTGATGTTGTTGCAATGGCAAGCTATGCACCACTTTTT
GTAAATGCCAATGACAGATGGTGGACTCCGGATGCAATTGTCTTCAACTC
TGCACAGCTCTATGGAACGCCTAGCTACTGGGTGCAACAATTTTTCAGAG
AATCAAGTGGGGCAACTCTTCTCAATGCAACCCTGCTAACAAATTCCTCT
AGTTCAATTGTCGCATCTGCAATTTCTTGGGAAGACTCAGAGAATGCCAA
AAGTTTCCTGAGAATAAAGGTTGTGAACCTCAGGAGCAATTCAGTTAATC
TCAAAGTTTCTGTGGATGGGTTGGGGCCAAATTCCATAAAATTATCTGGA
TCAACAAAGACTCAGCTCACGTCTAGCAATTTGAAGGATGAGAATTCCTT
CACGGAGCCAAACAAGGTGGTACCGAGCCTAACACTACTTGAAAATGCTG
CCAAGGACATGGATGTTGTAATCTCGCCATATTCTTTCACTTCGTTTGAT
TTGTTAAGAGAATCAGTCGCTATGAAGATGGAGGGGGCTGATTCTTTCTC
CAGATCTTCAATTTAAAGAATAAGTATATTTTTACGCGATAATGACACCC
ACTTTACTTACCTGCTGATTGGTTGGTCCAATTGCTGCAAAAGATATGGA
AAACGCTTTGTGGTTTCGTTGGTTCAATGGCCCTTTTTTTTAATAATTTA
ATAATTTGTTACATCGAGGGTGGAAATTTTTGTTTACAGGGGATTCCTGT
TACGAATGGGCCACCCTACACGCAACA
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