EY684687

Overview
NameEY684687
Unique NameEY684687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684687 vs. ExPASy Swiss-Prot
Match: CHIP_ARATH (E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.287e-63
Identity = 116/201 (57.71%), Postives = 151/201 (75.12%), Query Frame = 2
Query:   14 ETIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKRSWELQSXXXXXXXXXXXXHVLDISRKEGFLDEASSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKETNSSIYEQ 616
            + IQL H+SVK HY+LG  LLQ+ E+ +G+KEL++AL+LGR + P GY+VE+IW+EL++AKY+ WE  S+ RSWEL S              LD+SR E   DEA + H ++++AL +VF+KAAE+D P EVPDYLCC ITL+IFRDPVI+PSGVTYERA IL+HL KVGKFDPITRE +  + LVPNLAIKE  ++  E+
Sbjct:   69 KAIQLVHNSVKAHYMLGLALLQKKEFTNGVKELQRALDLGRCSNPTGYMVEEIWEELSKAKYMEWELVSAMRSWELNSLKETCEAALNQQRALDMSRTEESSDEAYTAHTERLKALERVFKKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEHLKKVGKFDPITREKIDPANLVPNLAIKEAVAAYLEK 269          
BLAST of EY684687 vs. ExPASy Swiss-Prot
Match: STUB1_MOUSE (STIP1 homology and U box-containing protein 1 OS=Mus musculus GN=Stub1 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 74/216 (34.26%), Postives = 111/216 (51.39%), Query Frame = 2
Query:   20 IQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKET-NSSIYEQTWL 625
            ++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK   W     +R     EL S             + +  R  EG  D+           + H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE  ++ I E  W+
Sbjct:   88 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 301          
BLAST of EY684687 vs. ExPASy Swiss-Prot
Match: STUB1_CHICK (STIP1 homology and U box-containing protein 1 OS=Gallus gallus GN=STUB1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 73/220 (33.18%), Postives = 115/220 (52.27%), Query Frame = 2
Query:   11 EETIQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDI--SRKEGFLDEA---------SSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKET-NSSIYEQTWL 625
            +  ++LD  SVK H+ LGQ  ++   Y + I  L++A NL +  +      +DI   L  AK   W     KR     EL S             + +   +++E  +DE+          + H K +  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE  ++ I E  W+
Sbjct:   94 KRALELDGQSVKAHFFLGQCQMEMENYDEAIANLQRAYNLAKEQRLN--FGDDIPSALRIAKKKRWNSIEEKRINQENELHSYLTRLIMAEKERELAECRKAQQEENVDESRGRVQLAGIEAKHDKYLADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFISENGWV 311          
BLAST of EY684687 vs. ExPASy Swiss-Prot
Match: STUB1_HUMAN (STIP1 homology and U box-containing protein 1 OS=Homo sapiens GN=STUB1 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.603e-26
Identity = 74/216 (34.26%), Postives = 112/216 (51.85%), Query Frame = 2
Query:   20 IQLDHDSVKGHYLLGQTLLQRNEYADGIKELEKALNLGRGAKPKGYIVEDIWQELARAKYLLWEQESSKR---SWELQSXXXXXXXXXXXXHVLDISRK-EGFLDEA---------SSTHLKQMEALRQVFRKAAEDDTPAEVPDYLCCKITLDIFRDPVITPSGVTYERAVILDHLDKVGKFDPITREPLRESQLVPNLAIKET-NSSIYEQTWL 625
            ++LD  SVK H+ LGQ  L+   Y + I  L++A +L +  +      +DI   L  AK   W     +R     EL S             + +  R  EG  D++          + H K M  + ++F +  E     ++PDYLC KI+ ++ R+P ITPSG+TY+R  I +HL +VG FDP+TR PL + QL+PNLA+KE  ++ I E  W+
Sbjct:   87 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN--FGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 300          
The following BLAST results are available for this feature:
BLAST of EY684687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHIP_ARATH6.287e-6357.71E3 ubiquitin-protein ligase CHIP OS=Arabidopsis th... [more]
STUB1_MOUSE2.759e-2634.26STIP1 homology and U box-containing protein 1 OS=M... [more]
STUB1_CHICK2.759e-2633.18STIP1 homology and U box-containing protein 1 OS=G... [more]
STUB1_HUMAN3.603e-2634.26STIP1 homology and U box-containing protein 1 OS=H... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-C08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684687 ID=EY684687; Name=EY684687; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGAGGAAACAATTCAGTTGGATCACGATTCTGTCAAGGGAC
ACTATTTGTTGGGACAAACGTTGCTACAGAGGAACGAGTATGCTGATGGA
ATCAAGGAACTGGAAAAAGCTTTGAATCTTGGGAGGGGTGCAAAGCCAAA
GGGTTATATTGTAGAGGATATTTGGCAGGAGCTGGCAAGAGCAAAATACC
TGTTGTGGGAGCAAGAATCTAGCAAGCGTTCATGGGAATTACAAAGCTTG
AAGGAAGCTTGTGAAGCAGCTCTTGAAGAAAAGCATGTTCTTGATATTTC
TAGAAAAGAAGGGTTTTTGGATGAAGCTAGTTCTACTCATTTGAAACAAA
TGGAGGCTTTGAGACAAGTATTCCGGAAAGCTGCAGAAGATGACACGCCA
GCTGAGGTCCCGGATTACCTGTGTTGCAAAATAACTCTTGATATTTTTCG
AGATCCTGTCATTACTCCAAGTGGGGTTACTTATGAGAGGGCAGTAATCC
TTGATCATCTTGATAAGGTGGGTAAGTTTGATCCAATCACGCGGGAACCA
CTGAGAGAATCCCAGCTTGTACCAAACTTGGCAATAAAGGAAACAAATTC
AAGCATCTATGAACAAACATGGTTGGGCAATACAGGACACGTTGAAATTT
CTACCTGCGGGATTGGGACCAAATTACTTTCTGAATATGGGAACCGACCC
TGCTGGCGACAATATGGAGAAGAACCCAAATACAACCTACAATTAAATTC
ACCCATCGGACGCCCGAGAAAACAACGCCCAGACAAACCACCGCAACCAC
AGCGAAGAAAGCGCACTATCTCGACAGTCGCAAATCGCCCATCAGAAAGA
GCCAAAAGAGAAAACCGGAAAAAAGGGCCAAAAAAAAA
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