EY684677

Overview
NameEY684677
Unique NameEY684677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684677 vs. ExPASy Swiss-Prot
Match: RBM25_MOUSE (RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 50/115 (43.48%), Postives = 78/115 (67.83%), Query Frame = 3
Query:   72 VKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 416
            V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S    H     +L+ +  +LD+EAE+F++KMWR+LI+E +  + GL
Sbjct:  727 VNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 839          
BLAST of EY684677 vs. ExPASy Swiss-Prot
Match: RBM25_HUMAN (RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.380e-23
Identity = 50/115 (43.48%), Postives = 78/115 (67.83%), Query Frame = 3
Query:   72 VKTPDNKKLLDAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETGL 416
            V T + +K +  K LI+ IP  K ELF+Y ++W++ D   +  R+RPWI+KKI E++GEEE TLVD++ S    H     +L+ +  +LD+EAE+F++KMWR+LI+E +  + GL
Sbjct:  729 VNTEEKRKHI--KSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLIYETEAKKIGL 841          
The following BLAST results are available for this feature:
BLAST of EY684677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RBM25_MOUSE1.380e-2343.48RNA-binding protein 25 OS=Mus musculus GN=Rbm25 PE... [more]
RBM25_HUMAN1.380e-2343.48RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684677 ID=EY684677; Name=EY684677; organism=Citrus sinensis; type=EST; length=789bp
ATCGCACCAGAGATGAGCACAAAGAGAAGATTCTTGACAGGGACAGAGAT
CGGGAACATGGTTTGGATAAAGTGAAGACGCCAGATAACAAGAAACTTTT
GGATGCAAAACAATTGATTGATATGATCCCTAAGACAAAGGAGGAGTTGT
TCTCATATGAGATAAATTGGGCCGTGTACGACAAGCATGAGCTGCATGAG
AGAATGAGACCGTGGATTTCAAAGAAGATTACAGAGTTTCTCGGAGAAGA
AGAAACTACTTTGGTAGACTATATTGTATCCAGTACTCAAGACCATGTGA
AGGCATCCCAAATGTTGGAGTTGCTACAAACTATTTTAGACGATGAAGCT
GAAATGTTTGTCCTTAAGATGTGGAGGATGCTCATCTTTGAAATCAAGAA
GGTAGAGACGGGTCTTGCGTTGAGATCAAAATCCTAAATGGATCGGTTAC
TCATCTTTGATATCAAGATAGTAGACTTGCATTGAGATCAAAATCCTAAA
TGGATCTTGTTTTTTGTTTGTTTCTGCTAGTTGCAAGGCTGATTCTTGCC
ATTGTATCCATTAACTAGTAAACCCATTTTGTTAGTCATCTCCCTCTGGA
GAAACGAACATGGATTGCAATTAAGGTCTATCCTTGTTCTTATGCGTATG
TATTATTTTCCTCTATCCAGAAATGAATCTATTTTGACTGGNNGNNAAAC
ANGCANCCAACCAGGCCGGCAGGAAGAAGGGAACAGGGCACCAAAAAGAG
AAGCGAAAGAAAAGAAGCGAAACGAAAGGCGGAAGCAGA
back to top