EY684663

Overview
NameEY684663
Unique NameEY684663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_CYTH3 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=pdxH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.050e-13
Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1
Query:   16 KFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            K+ +GS++P+P +WGGY LKP  FEFWQG+ SRLHDR+ Y   ++ G   W + R+CP
Sbjct:  161 KYPEGSVVPRPAHWGGYTLKPAYFEFWQGRPSRLHDRIVY---DLEGDIRWNVFRICP 215          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_BORPE (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella pertussis GN=pdxH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.907e-13
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   40 PKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            P+P +WGGYRLKP  FEFWQG+ SRLHDRL+Y P   +GK+ W I+RL P
Sbjct:  164 PRPPHWGGYRLKPNRFEFWQGRPSRLHDRLRYEP---DGKQGWTIDRLSP 210          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_BORPA (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella parapertussis GN=pdxH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.907e-13
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   40 PKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            P+P +WGGYRLKP  FEFWQG+ SRLHDRL+Y P   +GK+ W I+RL P
Sbjct:  164 PRPPHWGGYRLKPNRFEFWQGRPSRLHDRLRYEP---DGKQGWTIDRLSP 210          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_BORBR (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella bronchiseptica GN=pdxH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.907e-13
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:   40 PKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            P+P +WGGYRLKP  FEFWQG+ SRLHDRL+Y P   +GK+ W I+RL P
Sbjct:  164 PRPPHWGGYRLKPNRFEFWQGRPSRLHDRLRYEP---DGKQGWTIDRLSP 210          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_CYAP8 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cyanothece sp. (strain PCC 8801) GN=pdxH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            +R KF+ G  IP P +WGGYR+ P  FEFWQG+ +RLHDR  Y+ QE N    W+I+RL P
Sbjct:  156 IRRKFAQGE-IPLPSFWGGYRIVPHYFEFWQGRPNRLHDRFSYTLQEDN---TWEIHRLSP 212          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_BORA1 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella avium (strain 197N) GN=pdxH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.974e-12
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   28 GSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            G   P+P +WGGYRL P  FEFWQG+ SRLHDRL+Y P   +GK+ W ++RL P
Sbjct:  160 GDTPPRPPHWGGYRLVPTYFEFWQGRPSRLHDRLRYRP---DGKQGWVMDRLSP 210          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_BORPD (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=pdxH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.701e-11
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   28 GSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            G   P+P +WGGYR+ P LFEFWQG+ SRLHDRL+Y P   +G+  W I+RL P
Sbjct:  160 GEQPPRPPHWGGYRVVPTLFEFWQGRPSRLHDRLRYLP---DGRGGWAIDRLSP 210          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_VIBCM (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=pdxH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            +++KF++G  IP P +WGGYR++PE  EFWQG   RLHDR  YS Q+ N    W ++RL P
Sbjct:  156 LKQKFANGE-IPVPSFWGGYRIRPESLEFWQGGEHRLHDRFLYSRQDDN----WTVDRLAP 211          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_VIBCH (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vibrio cholerae GN=pdxH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            +++KF++G  IP P +WGGYR++PE  EFWQG   RLHDR  YS Q+ N    W ++RL P
Sbjct:  156 LKQKFANGE-IPVPSFWGGYRIRPESLEFWQGGEHRLHDRFLYSRQDDN----WTVDRLAP 211          
BLAST of EY684663 vs. ExPASy Swiss-Prot
Match: PDXH_VIBC3 (Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=pdxH PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.222e-11
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    7 VREKFSDGSLIPKPEYWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 189
            +++KF++G  IP P +WGGYR++PE  EFWQG   RLHDR  YS Q+ N    W ++RL P
Sbjct:  156 LKQKFANGE-IPVPSFWGGYRIRPESLEFWQGGEHRLHDRFLYSRQDDN----WTVDRLAP 211          
The following BLAST results are available for this feature:
BLAST of EY684663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PDXH_CYTH34.050e-1351.72Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cy... [more]
PDXH_BORPE6.907e-1364.00Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_BORPA6.907e-1364.00Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_BORBR6.907e-1364.00Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_CYAP82.010e-1254.10Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cy... [more]
PDXH_BORA19.974e-1257.41Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_BORPD1.701e-1157.41Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bo... [more]
PDXH_VIBCM2.222e-1150.82Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vi... [more]
PDXH_VIBCH2.222e-1150.82Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vi... [more]
PDXH_VIBC32.222e-1150.82Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Vi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684663 ID=EY684663; Name=EY684663; organism=Citrus sinensis; type=EST; length=821bp
CCACGCGTCCGGGAAAAATTCTCTGATGGGAGTTTGATTCCAAAACCAGA
ATACTGGGGAGGATACAGGCTTAAACCAGAGCTTTTCGAATTCTGGCAAG
GACAGACGTCTCGTTTGCATGATAGGTTGCAATATTCTCCTCAGGAAATC
AACGGAAAACGGGTATGGAAAATCAACCGCTTGTGTCCCTGACTAGTATT
CTCTGCTTCCTCATTGTGAATTCATCATCCATGGTATTCTGCAACTTGTT
GCAGTGAATTCATATAATATGTTTTGAGTGGCAATATGCATGTAACGAAA
TTATAAATTACATATAGGGGTTCAGCGAAATATGTTGGTGCCACTCTTAA
GTATGTTGGAAACCTATGGCGAATAATTATGAGTCAAAGAATACAAATTT
ATTACCACAAACACACTAAATAGGGAATGTAAAACTGGCTTCCTCCCCCT
CCGGTGCGCCCCCCCCCCCCCGCCCCCAACTCGCGGGTGTGTTAGGGTCC
ATATACGATAGGTGCCCAATATAGCTCATGTACAAGACTGGTTGTTAACA
TATATTCTGCTGGCAATTACTCTCTGGATATAAAATATATACAAGTCCCA
CCCTCTAACACGGCAGGCGAGCGCCAGGGGGGGGCGACACTTGGACAAAC
GAACCACTACGTGGGGCCCCTGGCCGGCCCCGCTCGGAGATAACGGCGCT
CTCAACACGCGCCCACGCCCGCACCAGCGGCCCAGGAGACACATCGCCCG
GCCCCTGNCCCGCCGCCGTAGCGGCGGAGGCGCGGGAAACGGGCCAAGAG
AGGCGAACTNAACAGCCCGCG
back to top