EY684638

Overview
NameEY684638
Unique NameEY684638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEFS (Indole-3-glycerol phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=trpC PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.194e-69
Identity = 138/150 (92.00%), Postives = 138/150 (92.00%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENT            VITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD
Sbjct:  129 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTLDLLPRIPRDRLVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 278          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEPF (Indole-3-glycerol phosphate synthase OS=Pseudomonas fluorescens (strain Pf0-1) GN=trpC PE=3 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 5.305e-64
Identity = 128/150 (85.33%), Postives = 132/150 (88.00%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQIVEARALGADCVLLIVSALDDVKMAELA+VAK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTF+VSLE T            VITESGI+NRADVELMEIS VY+FLVGE FMRAENPG ELQRLFFPERGV VSGSTLD
Sbjct:  129 PYQIVEARALGADCVLLIVSALDDVKMAELASVAKDVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFDVSLETTLDLLPRIPRDRLVITESGILNRADVELMEISDVYAFLVGEAFMRAENPGIELQRLFFPERGVPVSGSTLD 278          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEF5 (Indole-3-glycerol phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=trpC PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.438e-63
Identity = 126/150 (84.00%), Postives = 132/150 (88.00%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQIVEARALGADCVLLIV+ALDD +MAELAAVAK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEV+LE T            VITESGI+NRADVELMEIS VYSFLVGE FMRAE+PG+ELQRLFFPERGV VSGSTLD
Sbjct:  129 PYQIVEARALGADCVLLIVAALDDARMAELAAVAKGVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVNLETTLDLLPRIPRERLVITESGILNRADVELMEISDVYSFLVGEAFMRAESPGSELQRLFFPERGVPVSGSTLD 278          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSESM (Indole-3-glycerol phosphate synthase OS=Pseudomonas syringae pv. tomato GN=trpC PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.012e-59
Identity = 120/150 (80.00%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQ+VEARALGADC+LLIVSALDDV+MAELAAVAK VGLDVLVEVHDGDELERALKTLDT LVGVNNRNLHTFEVSLE T            VITESGI NRADVELMEI+ VYSFLVGE FMRAE PGAELQRLFFPER  A  G  +D
Sbjct:  129 PYQVVEARALGADCILLIVSALDDVQMAELAAVAKGVGLDVLVEVHDGDELERALKTLDTKLVGVNNRNLHTFEVSLETTLDLLPRIPRDRTVITESGIFNRADVELMEINDVYSFLVGEAFMRAEQPGAELQRLFFPERKPAAGGPAVD 278          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSE14 (Indole-3-glycerol phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=trpC PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.145e-58
Identity = 118/150 (78.67%), Postives = 128/150 (85.33%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQ+VEARALGADC+LLIVSAL+D +MAELA VAK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLE T            VITESGI+NRADVELMEI+ VYSFLVGE FMRAE+PGAEL RLFFPER +A SG ++D
Sbjct:  129 PYQVVEARALGADCILLIVSALEDGQMAELADVAKRVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLETTLELLPRIPRDRLVITESGILNRADVELMEINDVYSFLVGEAFMRAEHPGAELLRLFFPERKLAASGPSID 278          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEMY (Indole-3-glycerol phosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=trpC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.330e-58
Identity = 116/141 (82.27%), Postives = 123/141 (87.23%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERG 423
            PYQIVEARALGADCVLLIVS LDDV+MAELAAVAK VGLDVLVEVHDG+ELERAL TLDTPLVG+NNRNLHTFEVSLE T            V+TESGI+NRADVELMEIS VY+FLVGE FMRAE+PGAELQRLFFPERG
Sbjct:  129 PYQIVEARALGADCVLLIVSCLDDVRMAELAAVAKDVGLDVLVEVHDGNELERALNTLDTPLVGINNRNLHTFEVSLETTLDLLPRIPRERLVVTESGILNRADVELMEISEVYAFLVGEAFMRAESPGAELQRLFFPERG 269          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEPW (Indole-3-glycerol phosphate synthase OS=Pseudomonas putida (strain W619) GN=trpC PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.266e-57
Identity = 116/140 (82.86%), Postives = 120/140 (85.71%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPER 420
            PYQI+EARALGADCVLLIVSALDDVKMAELAA AK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLE T             ITESGI+NRADVELMEI+ VYSFLVGE FMRAE PG ELQRLFFPE+
Sbjct:  129 PYQIIEARALGADCVLLIVSALDDVKMAELAATAKEVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLETTLDLLPRIPRDRLAITESGILNRADVELMEINDVYSFLVGEAFMRAEQPGLELQRLFFPEQ 268          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEE4 (Indole-3-glycerol phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=trpC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.809e-57
Identity = 115/140 (82.14%), Postives = 120/140 (85.71%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPER 420
            PYQIVEARALGADCVLLIVSALDDVKMAELAA AK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTF+VSLE T             ITESGI+NRADVELMEI+ VYSFLVGE FMRAE PG ELQRLFFP++
Sbjct:  129 PYQIVEARALGADCVLLIVSALDDVKMAELAATAKDVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFDVSLETTLDLLPRIPRDRLAITESGILNRADVELMEINEVYSFLVGEAFMRAEQPGVELQRLFFPDQ 268          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEAE (Indole-3-glycerol phosphate synthase OS=Pseudomonas aeruginosa GN=trpC PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.809e-57
Identity = 114/150 (76.00%), Postives = 125/150 (83.33%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPERGVAVSGSTLD 450
            PYQIVEARA+GADC+LLIVSALDDV MAELAA AKSVGLDVLVEVHDG ELERALKTLDTPLVG+NNRNLHTFEVSLE T            V+TESGI+NRADVELME+S VY+FLVGE FMRA++PG EL+RLFF ERG  V G+  D
Sbjct:  129 PYQIVEARAIGADCILLIVSALDDVLMAELAATAKSVGLDVLVEVHDGTELERALKTLDTPLVGINNRNLHTFEVSLETTLDLLPEIPRDRLVVTESGILNRADVELMEVSEVYAFLVGEAFMRADDPGLELKRLFFQERGAVVLGADPD 278          
BLAST of EY684638 vs. ExPASy Swiss-Prot
Match: TRPC_PSEPU (Indole-3-glycerol phosphate synthase OS=Pseudomonas putida GN=trpC PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.281e-57
Identity = 116/140 (82.86%), Postives = 119/140 (85.00%), Query Frame = 1
Query:    1 PYQIVEARALGADCVLLIVSALDDVKMAELAAVAKSVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLENTXXXXXXXXXXXXVITESGIVNRADVELMEISGVYSFLVGETFMRAENPGAELQRLFFPER 420
            PYQIVEARALGADCVLLIVSALDDVKMAELAA AK VGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLE T             ITESGI+NRADVELM I+ VYSFLVGE FMRAE PG ELQRLFFPE+
Sbjct:  129 PYQIVEARALGADCVLLIVSALDDVKMAELAATAKDVGLDVLVEVHDGDELERALKTLDTPLVGVNNRNLHTFEVSLETTLDLLPRIPRDRLAITESGILNRADVELMAINEVYSFLVGEAFMRAEQPGLELQRLFFPEQ 268          
The following BLAST results are available for this feature:
BLAST of EY684638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 383
Match NameE-valueIdentityDescription
TRPC_PSEFS4.194e-6992.00Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEPF5.305e-6485.33Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEF53.438e-6384.00Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSESM3.012e-5980.00Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSE141.145e-5878.67Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEMY3.330e-5882.27Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEPW1.266e-5782.86Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEE44.809e-5782.14Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEAE4.809e-5776.00Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]
TRPC_PSEPU6.281e-5782.86Indole-3-glycerol phosphate synthase OS=Pseudomona... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684638 ID=EY684638; Name=EY684638; organism=Citrus sinensis; type=EST; length=851bp
CCCTACCAGATCGTCGAAGCTCGTGCCTTGGGCGCCGATTGCGTGCTGTT
GATCGTCTCCGCACTGGATGACGTGAAGATGGCCGAACTGGCGGCCGTGG
CCAAAAGCGTCGGCCTCGACGTGCTGGTGGAAGTGCACGACGGTGATGAA
CTGGAACGCGCGTTGAAAACCCTCGACACACCGTTGGTGGGCGTCAACAA
CCGCAACCTGCACACGTTTGAAGTCAGCCTGGAAAACACCCTCGACCTGT
TGCCGCGTATCCCGCGTGACCGGTTGGTGATTACCGAAAGTGGCATCGTC
AATCGCGCCGATGTCGAACTGATGGAAATCAGCGGCGTGTACTCGTTCCT
CGTCGGCGAAACCTTCATGCGTGCCGAGAACCCGGGGGCTGAATTGCAGC
GCCTGTTCTTCCCGGAGCGTGGCGTTGCTGTCAGCGGTTCGACCCTGGAT
TGATGATGACCCAGCCGGTGGCGATGACGGTCGAGGCAGGCCTTAAGGCC
GAGCAGGATTTGCTCGCCGCTGTCTGCGCGGGGGAGCAGCCGTTCGGCCT
GCTGTTCTGGCAGCCCAGCGATCCAACGTTGGTGATGCCTCCGCGTTTGA
GCCGACTTCCGGCATTCGAGACGCGCAGTCAGGTATCCGGCACGAGGCCG
GTTGCCCGGGGCTGCGTGCGGGAAGACGGCGGTGGACTGGGACCGGCACG
AAGAGGCGACGGACGAACCGTCCCTGGCGGGAGCGCAAGCAGCGGGGAGG
GCGTGAGCGAGGGGGGTCGCGAGCGGAGAGGGAGGGTTGTAAACGTGCAT
CCGGCGGCCCGCAACCCAACGGGGGAGCCGCCCCACCGGCCGCATGGGGG
G
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