EY684566

Overview
NameEY684566
Unique NameEY684566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana GN=MSI4 PE=1 SV=3)

HSP 1 Score: 330.487 bits (846), Expect = 4.978e-93
Identity = 159/223 (71.30%), Postives = 181/223 (81.17%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSG-----VVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVF 671
            LIWDVE QPNRHAVLGAA+SRPDLILTGHQDNAEFALAMCPTEP+VLSG     VVLWS+QDH++ +  +  S+ S            K  G G    ESP++G RG Y GHEDTVEDV F P+SAQEFCSVGDDSCLILWDAR+G+ P  KVEKAH+AD+HCVDWNPHD NLILTGSADN++ +FDRRKLT++GVGSPI+KFEGH AAVLCVQWSP+KSSVF
Sbjct:  190 LIWDVETQPNRHAVLGAANSRPDLILTGHQDNAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTDSKSSGSII----------KQTGEGTDKNESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVF 402          

HSP 2 Score: 33.113 bits (74), Expect = 4.978e-93
Identity = 24/64 (37.50%), Postives = 34/64 (53.12%), Query Frame = 1
Query:  670 FGSSAQDGILNILGSWKRLVKKQNYGDLKVPNYRPGLFLRHAGT*KQIC*TSLGKQLVPWSIVS 861
            FGSSA+DG+LNI   + R+ KK +    +      GLF +HAG   ++          PW+IVS
Sbjct:  402 FGSSAEDGLLNI-WDYDRVSKKSD----RAAKSPAGLFFQHAGHRDKVVDFHWNAS-DPWTIVS 459          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: MSI5_ARATH (WD-40 repeat-containing protein MSI5 OS=Arabidopsis thaliana GN=MSI5 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 7.134e-89
Identity = 153/227 (67.40%), Postives = 185/227 (81.50%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSG-----VVLWSVQDHVSALAAE---PGSA-KSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVF 671
            LIW+ E QP+R+AVLGA DSRPDL+L GHQD+AEFALAMCPTEP+VLSG     V+LW++QDH++   ++   PGS+ K T  G      + K+GG        PS+G RG Y GH+DTVEDV FCPSSAQEFCSVGDDSCL+LWDAR+G++PA+KVEKAH+AD+HCVDWNPHD NLILTGSADN++ +FDRR LTS+GVGSP++KFEGH AAVLCVQWSP+KSSVF
Sbjct:  170 LIWNTETQPDRYAVLGAPDSRPDLLLIGHQDDAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSDSKSPGSSFKQTGEG------SDKTGG--------PSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKSSVF 382          

HSP 2 Score: 34.2686 bits (77), Expect = 7.134e-89
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1
Query:  670 FGSSAQDGILNILGSWKRLVKKQNYGDLKVPNYRPGLFLRHAGT*KQIC*TSLGKQLVPWSIVS 861
            FGSSA+DG+LNI    +  V K++    K P+   GLF +HAG   ++        L PW+IVS
Sbjct:  382 FGSSAEDGLLNIWDCDR--VGKKSERATKTPD---GLFFQHAGHRDKVV-DFHWSLLNPWTIVS 439          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: CAF1_DROME (Probable histone-binding protein Caf1 OS=Drosophila melanogaster GN=Caf1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.998e-18
Identity = 73/241 (30.29%), Postives = 112/241 (46.47%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  + +PDL L GHQ    + L+  P     L+G +L +  DH   L                  NA+        P E   I A+  + GH   VEDV +       F SV DD  L++WD R+ +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     H+  + KIGEE
Sbjct:  154 LVFDYTKHPSKPEPSG--ECQPDLRLRGHQKEG-YGLSWNPN----LNGYLLSASDDHTICLW---------------DINAT--------PKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-HVWDLSKIGEE 357          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP7_DANRE (Histone-binding protein RBBP7 OS=Danio rerio GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.221e-18
Identity = 73/241 (30.29%), Postives = 109/241 (45.23%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L +D    P++    G  D  PDL L GHQ    + L+  P     LSG +L +  DH   L    G+                       P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LAFDYTKHPSKPDPSG--DCSPDLRLRGHQKEG-YGLSWNPN----LSGNLLSASDDHTICLWDISGA-----------------------PKEGKIVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: HAT2_CRYNE (Histone acetyltransferase type B subunit 2 OS=Cryptococcus neoformans GN=HAT2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.591e-17
Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  297 ESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGSTPAVKVE-KAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            + PS+     Y GH   V DV++ P +   F SV DD  +++WD RS +T     + + HNA+I+C+ + P    L LTGS+DN+I ++D RKL++       H FE H+  VL + WSP  S V +   +     H+  ++ IG E
Sbjct:  226 QDPSLQPLRLYTGHSAYVADVEWHPKNENMFGSVSDDGQIMIWDTRSDNTAKASSQVQGHNAEINCISFAPSSEYLFLTGSSDNTIALWDLRKLSTKH-----HSFEAHTNDVLQLSWSP-TSPVHFASASADRRVHIWDLDAIGAE 366          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBP4B_XENLA (Histone-binding protein RBBP4-B OS=Xenopus laevis GN=rbbp4-B PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.384e-17
Identity = 71/241 (29.46%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+  P     LSG +L +  DH   L                             P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPN----LSGNLLSASDDHTICL-----------------------WDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP4_XENTR (Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.384e-17
Identity = 71/241 (29.46%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+  P     LSG +L +  DH   L                             P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPN----LSGNLLSASDDHTICL-----------------------WDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP4_PONAB (Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.384e-17
Identity = 71/241 (29.46%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+  P     LSG +L +  DH   L                             P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPN----LSGHLLSASDDHTICL-----------------------WDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP4_HUMAN (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.384e-17
Identity = 71/241 (29.46%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+  P     LSG +L +  DH   L                             P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPN----LSGHLLSASDDHTICL-----------------------WDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
BLAST of EY684566 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.384e-17
Identity = 71/241 (29.46%), Postives = 108/241 (44.81%), Query Frame = 3
Query:   18 LIWDVEAQPNRHAVLGAADSRPDLILTGHQDNAEFALAMCPTEPYVLSGVVLWSVQDHVSALAAEPGSAKSTASGGANSKNASKSGGNGDKPLESPSIGARGKYLGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDARSGST--PAVKVEKAHNADIHCVDWNPHDVNLILTGSADNSIHMFDRRKLTSDGVGSPIHKFEGHSAAVLCVQWSPEKSSVFWKFCTGWNFKHLGIMEKIGEE 734
            L++D    P++    G  +  PDL L GHQ    + L+  P     LSG +L +  DH   L                             P E   + A+  + GH   VEDV +       F SV DD  L++WD RS +T  P+  V+ AH A+++C+ +NP+   ++ TGSAD ++ ++D R L        +H FE H   +  VQWSP   ++     T     ++  + KIGEE
Sbjct:  150 LVFDYTKHPSKPDPSG--ECNPDLRLRGHQKEG-YGLSWNPN----LSGHLLSASDDHTICL-----------------------WDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL-NVWDLSKIGEE 353          
The following BLAST results are available for this feature:
BLAST of EY684566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
MSI4_ARATH4.978e-9371.30WD-40 repeat-containing protein MSI4 OS=Arabidopsi... [more]
MSI5_ARATH7.134e-8967.40WD-40 repeat-containing protein MSI5 OS=Arabidopsi... [more]
CAF1_DROME3.998e-1830.29Probable histone-binding protein Caf1 OS=Drosophil... [more]
RBBP7_DANRE5.221e-1830.29Histone-binding protein RBBP7 OS=Danio rerio GN=rb... [more]
HAT2_CRYNE2.591e-1735.37Histone acetyltransferase type B subunit 2 OS=Cryp... [more]
RBP4B_XENLA3.384e-1729.46Histone-binding protein RBBP4-B OS=Xenopus laevis ... [more]
RBBP4_XENTR3.384e-1729.46Histone-binding protein RBBP4 OS=Xenopus tropicali... [more]
RBBP4_PONAB3.384e-1729.46Histone-binding protein RBBP4 OS=Pongo abelii GN=R... [more]
RBBP4_HUMAN3.384e-1729.46Histone-binding protein RBBP4 OS=Homo sapiens GN=R... [more]
RBBP4_CHICK3.384e-1729.46Histone-binding protein RBBP4 OS=Gallus gallus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-F08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684566 ID=EY684566; Name=EY684566; organism=Citrus sinensis; type=EST; length=951bp
TCCGACCCACGCGTCCGCTCATTTGGGATGTTGAGGCACAACCTAATCGC
CATGCTGTCTTAGGAGCTGCTGATTCTCGTCCAGATCTGATATTGACCGG
CCATCAAGATAATGCTGAATTTGCTCTGGCCATGTGTCCAACTGAACCCT
ATGTGCTCTCTGGAGTGGTTTTATGGAGCGTCCAAGACCATGTCTCGGCT
TTGGCAGCAGAACCAGGTTCTGCAAAATCTACAGCTTCTGGTGGTGCCAA
CTCTAAAAATGCTTCCAAGAGTGGTGGGAATGGTGATAAACCTCTAGAGA
GCCCTTCTATTGGGGCACGAGGTAAATACCTAGGGCATGAAGACACTGTT
GAAGACGTTCAGTTCTGTCCATCAAGTGCACAGGAATTCTGCAGTGTAGG
TGATGATTCGTGCCTTATACTATGGGATGCCAGATCTGGCTCTACTCCAG
CTGTCAAGGTTGAGAAAGCTCATAATGCTGATATTCATTGTGTTGATTGG
AATCCCCATGATGTGAATCTCATATTGACGGGGTCTGCTGATAACTCTAT
TCATATGTTTGACCGCCGAAAACTCACTTCTGATGGAGTTGGATCACCTA
TTCATAAATTTGAGGGTCATAGTGCTGCTGTCCTTTGTGTACAGTGGTCT
CCTGAAAAGTCATCAGTCTTTTGGAAGTTCTGCACAGGATGGAATTTTAA
ACATCTTGGGATCATGGAAAAGATTGGTGAAGAAACAGAATTATGGTGAT
TTGAAAGTACCCAATTATCGCCCCGGCTTATTCCTTCGACATGCTGGAAC
ATAAAAACAAATTTGTTGAACTTCACTTGGGAAGCAGCTGGTTCCATGGA
GCATTGTAAGTGGGCATGCACAAGGGGAAAACAACCGCAGAGGGTGACCC
CTACCACAACGGACGAGGCACTATGGAGGTGTCCGCCCATAAAAACAATG
C
back to top