EY684563

Overview
NameEY684563
Unique NameEY684563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684563 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.535e-30
Identity = 75/235 (31.91%), Postives = 115/235 (48.94%), Query Frame = 1 
Query:   31 PTLSSAIVDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLYKGPAL---------VTGSFF----------------LSLLY------------IVQTSIIREYPEELMATFICCVFVTIQSTVVALIAERNPNSWRLKPDTELIAIGCSAFFAVALRSLAHTWACHKKGPVYVSMYKPLGIVFAIIMGVTLLGDTLYLGSVVGATIVAFGFYSVIWGQSEE 624
            PT +SAI +  PA TFI+A   R+EK+ +  +  LAK IGT+  ++GA  +TLYKGP +         VT S+F                L  +Y            ++Q  +++ YP  L  T   C F  IQ  ++A   E +   W++    EL  I  + F A  +      W   + GPV+V++Y+P+  +   IM   +LG+  YLG + GA ++  G Y V+WG+SEE
Sbjct:  109 PTFASAIQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEE 343
The following BLAST results are available for this feature:
BLAST of EY684563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA2.535e-3031.91Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-F04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684563 ID=EY684563; Name=EY684563; organism=Citrus sinensis; type=EST; length=918bp
TGTCTCTATCCCGGGATAGGATATAGCTCTCCCACTTTGTCCTCAGCAAT
TGTTGATCTTACCCCAGCTTTTACATTCATTCTTGCCTTAATTTCCAGAA
TGGAAAAGCTAGACTTGAGAGTTCAAAGCAGTCTGGCTAAGTCTATTGGC
ACCATGGTGTCAATTGCAGGGGCATTGACTGTGACTTTGTACAAGGGGCC
AGCACTTGTAACTGGTAGCTTTTTCCTGTCGCTGTTGTACATAGTGCAGA
CCTCAATTATTAGGGAATACCCTGAAGAGCTGATGGCAACATTCATTTGT
TGCGTCTTCGTGACCATTCAATCTACGGTAGTTGCTCTAATTGCAGAGAG
AAATCCAAACTCGTGGAGATTAAAGCCAGATACAGAGTTGATAGCTATTG
GGTGCTCGGCATTTTTTGCAGTAGCACTTCGTAGCCTTGCTCATACATGG
GCATGTCACAAGAAGGGACCTGTTTATGTTTCCATGTATAAGCCACTTGG
AATAGTCTTTGCGATCATAATGGGGGTTACTCTTCTTGGGGATACTCTTT
ATCTTGGAAGCGTAGTTGGAGCCACTATAGTTGCTTTCGGATTTTATTCA
GTGATTTGGGGTCAATCTGAAGAAAAGAAGATGATTGATGACAAAGATAT
TGACAGCCTTAAGTCTTCCTCTCCTAAAGCCCCTCTTCTGCAAACAAAAA
GCATATTTTGCGGAAATTAATATGTGATACCAAGCGTATGCCCTAGGGAA
ATGCTCTCCTGGCCAAATAACTCCTGCGACTGGACATCAGCCCAAAAATA
AAATGCGATGCTGGCGCAAGGAAATATGAAAAAGAGCTCCCCACTAATCA
TGGGCTCTGCGCGGGAACAGCATGACTGAACTGGGGGTCGGAGATTTTTT
AGAAAGGGGAGAACTTAA
back to top