EY684559

Overview
NameEY684559
Unique NameEY684559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684559 vs. ExPASy Swiss-Prot
Match: UMP3_ARATH (Uncharacterized protein At5g10860, mitochondrial OS=Arabidopsis thaliana GN=At5g10860 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.131e-66
Identity = 128/149 (85.91%), Postives = 136/149 (91.28%), Query Frame = 2
Query:   38 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIRMVSIGDVVRAAASEDHEENTALNALDQG 484
            TISD++K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITV+P+TKVLRAMQLMTDNRIRHIPVI DKGMI MVSIGDVVRA   E  EE   LNA  QG
Sbjct:   56 TISDVMKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSIGDVVRAVVHEHREELQRLNAYIQG 204          
BLAST of EY684559 vs. ExPASy Swiss-Prot
Match: YHCV_BACSU (CBS domain-containing protein yhcV OS=Bacillus subtilis GN=yhcV PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.774e-11
Identity = 40/126 (31.75%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  104 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIRMVSIGDVVRAAASEDHEENTALNALDQ 481
            + T+ +A   M QHNVGA+ VV+ G  K   G++T+RD   +   QGR  + T V ++M+ E  L++ +P+  +  A QLM  ++IR +P++D   ++ +V++GD+     S +   +   N   Q
Sbjct:   18 NQTIQEAASLMKQHNVGAIPVVEQGVLK---GMLTDRDIALRTTAQGRDGQ-TPVSEVMSTE--LVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLVGIVALGDLAVNQMSNESAGSALTNISHQ 137          
BLAST of EY684559 vs. ExPASy Swiss-Prot
Match: Y525_METKA (Uncharacterized protein MK0525 OS=Methanopyrus kandleri GN=MK0525 PE=4 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.774e-11
Identity = 38/108 (35.19%), Postives = 67/108 (62.04%), Query Frame = 2
Query:  107 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIRMVSIGDVVR 427
            +T  +    M +H +G++V+V   E+    GIITERD + K++ QG++       DIM++   +ITV  D +V  A++LM D  IR +P++DD G +I +V++ D+++
Sbjct:   21 ETAVEIAYKMREHGIGSVVIVN--EKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQP--VITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQ 124          
BLAST of EY684559 vs. ExPASy Swiss-Prot
Match: Y653_METJA (Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii GN=MJ0653 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.317e-11
Identity = 36/115 (31.30%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   98 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIRMVSIGDVVRAA 433
            T + ++YD    MT++N+GA+V+V   E     GI+TERD +++++     SK+ K  D++ EE    K+IT+  +  +  A ++M  + I+ +PV+ D  ++ +V+  D+VR +
Sbjct:   21 TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVV-----SKNLKPKDVLAEEVMSKKIITIPQNASITEAAKIMATHGIKRLPVVKDGELVGIVTQSDIVRVS 127          
The following BLAST results are available for this feature:
BLAST of EY684559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UMP3_ARATH1.131e-6685.91Uncharacterized protein At5g10860, mitochondrial O... [more]
YHCV_BACSU1.774e-1131.75CBS domain-containing protein yhcV OS=Bacillus sub... [more]
Y525_METKA1.774e-1135.19Uncharacterized protein MK0525 OS=Methanopyrus kan... [more]
Y653_METJA2.317e-1131.30Uncharacterized protein MJ0653 OS=Methanocaldococc... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-E12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684559 ID=EY684559; Name=EY684559; organism=Citrus sinensis; type=EST; length=1003bp
CCACGCGTCCGCCCACGCGTCCGTGTCTCGAGAGCACACAATTTCAGACA
TATTGAAAGCAAAAGGTAAAGGTGCGGATGGCTCTTGGCTTTGGTGCACT
ACTGATGACACTGTCTATGATGCTGTCAAGTCGATGACACAGCATAACGT
TGGAGCGTTGGTCGTCGTCAAACCCGGAGAGCAAAAGTCTGTTGCTGGGA
TCATCACAGAGAGAGATTATCTCAGGAAGATCATAGTGCAGGGAAGATCA
TCCAAGTCAACTAAAGTTGGGGACATCATGACTGAAGAGAACAAGCTGAT
CACAGTCTCACCTGACACCAAAGTTCTGCGGGCAATGCAATTGATGACAG
ATAACCGTATTCGGCACATTCCAGTAATTGATGACAAGGGAATGATACGC
ATGGTGTCCATTGGAGATGTTGTTCGCGCTGCGGCGAGCGAGGATCACGA
GGAGAACACGGCCCTGAACGCTCTAGACCAAGGACGTCCCTAAAATGACA
TGACAAAATCAAACGCCGACACCGCCATTCTCTCGCCTCACCCCTGCCAC
CAAAGAAGCCCGCACATAGCCACCCCGCGCTCTCCCTCTTCGCCGCCGGG
CGGCGACCCCCTAGCTCGCCCGCCGCAGAACACCCCGAAGAAGAACACAA
CAAACTCCGCCCACCCGACGGCCCCCCCCCCCTAAACCCACCTGCACAAC
AAACAGCGAAACAGGAACCAGGAGACGGAGCGGCCCGGATGCACGGCCGT
CACGCGCCGCAGGACAGCCATTGCGCAACATAAGCGTGTACCACGACTGA
CCGGCCTCACCATGTTATTGCAAGAACACGGCGCCAAAAACCGTGTCCAG
CGCAAACAAGACAGGAGAACTAAGCGTTGGGCGCAGGATGCGATAACCGC
TCAGGGCACAGAGAGAAAAAGAGACAGACGCCCCACCCACCCGCACAGAC
GGCGGGCGGGAACCCCAACACCCACATACAGAAAACACACACCAACCAAC
ACC
back to top