EY684558

Overview
NameEY684558
Unique NameEY684558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8800 contig Csv1_Contig8800:1..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684558 vs. ExPASy Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.160e-17
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 3
Query:  267 PRNIQEDLMIPKWREAVYEEMRALQKNDTWQLVNHPPEKKPAGCKWVFTTKHKADGTVERYKARLVAKGFSQTYGIDYQETFAPVV 524
            P+++   L  P W +A+ EE+ AL +N TW LV  P  +   GCKWVF TK  +DGT++R KARLVAKGF Q  GI + ET++PVV
Sbjct:   28 PKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVV 113          
BLAST of EY684558 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.568e-16
Identity = 51/126 (40.48%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  246 MLSSYSVPRNIQEDLMIPKWRE---AVYEEMRALQKNDTWQLVNHPPEKKPAGCKWVFTTKHKADGTVERYKARLVAKGFSQTYGIDYQETFAPVVARSSAEAEFRAMAQGICELIWLKIFLMALH 614
            ++S    P +++E L  P+  +   A+ EEM +LQKN T++LV  P  K+P  CKWVF  K   D  + RYKARLV KGF Q  GID+ E F+PVV  +S        A    E+  L +    LH
Sbjct:  804 LISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLH 929          

HSP 2 Score: 72.4034 bits (176), Expect = 3.997e-12
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  492 IDYQETFAPVVARSSAEAEFRAMAQGICELIWLKIFLMALHMVQKETMRLYCDNKAAINIAHNPVQHDRTKHIEIDRHFIKEKNESGQIVIPHVTTRNNQEMFSLKAYQKKK 827
            I +Q      VA S+ EAE+ A  +   E+IWLK FL  L + QKE + +YCD+++AI+++ N + H RTKHI++  H+I+E  +   + +  ++T  N      K   + K
Sbjct: 1205 ISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNK 1315          
BLAST of EY684558 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 8.605e-15
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  303 WREAVYEEMRALQKNDTWQLVNHPPEKKPAGCKWVFTTKHKADGTVERYKARLVAKGFSQTYGIDYQETFAPVVARSS 536
            W EA+  E+ A + N+TW +   P  K     +WVF+ K+   G   RYKARLVA+GF+Q Y IDY+ETFAPV   SS
Sbjct:  906 WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISS 983          

HSP 2 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 33/88 (37.50%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  522 VARSSAEAEFRAMAQGICELIWLKIFLMALHMVQKETMRLYCDNKAAINIAHNPVQHDRTKHIEIDRHFIKEKNESGQIVIPHVTTRN 785
            VA SS EAE+ A+ + + E +WLK  L ++++  +  +++Y DN+  I+IA+NP  H R KHI+I  HF +E+ ++  I + ++ T N
Sbjct: 1289 VAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTEN 1376          
The following BLAST results are available for this feature:
BLAST of EY684558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
M820_ARATH3.160e-1751.16Uncharacterized mitochondrial protein AtMg00820 OS... [more]
POLX_TOBAC1.568e-1640.48Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME8.605e-1548.72Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-E11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684558 ID=EY684558; Name=EY684558; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGCTAAAGGTTTACTCAAGAAGGAACAAGATACAGCCTCCT
CAACTCCACCAGTCACCTTTGCCGAGTGCTGAAAATTTGGAAAACAAGGG
AAACTCTTTTGTATCTAACCTTCAAAAAAATGTTGATTCAGTTGAGTTTT
CTGATCTTGATCTTCCGTCTTGCACTTTGCATCCAATTTCAAACTTTGTT
TCTTGCCACATGCTGTCCTCTTCTTTTAAAGCCTTTGTTACTGGTATGTT
ATCTTCTTATTCTGTCCCAAGAAACATACAGGAAGATCTTATGATTCCAA
AGTGGAGAGAAGCTGTTTATGAAGAAATGAGAGCATTACAAAAGAATGAC
ACATGGCAACTTGTGAACCATCCACCTGAAAAGAAACCAGCTGGATGCAA
ATGGGTTTTTACGACCAAACACAAAGCTGATGGCACGGTCGAGAGATATA
AAGCAAGACTTGTGGCAAAAGGATTCTCGCAAACTTATGGAATCGACTAC
CAAGAAACCTTTGCACCTGTAGTGGCCAGGTCAAGTGCAGAAGCTGAGTT
TAGAGCAATGGCTCAAGGAATATGTGAGCTAATATGGTTGAAGATTTTCT
TGATGGCATTACATATGGTTCAAAAGGAAACAATGAGACTTTACTGTGAC
AACAAAGCTGCCATCAATATTGCTCACAATCCTGTACAACACGACAGGAC
TAAACACATTGAAATTGATAGACATTTCATCAAAGAGAAAAATGAAAGTG
GTCAAATTGTAATCCCCCATGTTACCACCAGAAACAACCAGGAAATGTTC
TCACTGAAAGCCTACCAAAAAAAAAAAAAAGGCGCGGCGCTCTAGAAGAT
CCCAACTTAACATACCGTGGCATGCCACGACAAAACTCTCCTAAAAGGGA
ACCACAA
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