EY684548

Overview
NameEY684548
Unique NameEY684548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684548_ssr349 microsatellite EY684548_ssr349:349..360. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: YQ020_HUMAN (Putative endonuclease FLJ39025 OS=Homo sapiens PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 9.398e-28
Identity = 70/168 (41.67%), Postives = 99/168 (58.93%), Query Frame = 3
Query:  369 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKN-VNIDYTAPCGWSNTFWDKATT*CTXNNNEDINPLMGGSGSTWG---RGNEINSKP 860
            L+ +GGVD+SF K D   AC  +VVL    L++VYE+  ++ L  PYV GFLAFRE P LL L+  ++++     PQVL+VDGNG+LH RGFG+A H+GVL DL  +GV K  + +D     G  N    K          +   PL+G SG+  G   R ++ +++P
Sbjct:   45 LQRVGGVDVSFVKGDSVRACASLVVLSFPELEVVYEESRMVSLTAPYVSGFLAFREVPFLLELVQQLREKEPGLMPQVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVD-----GLENNALHKEKIRLLQTRGDSF-PLLGDSGTVLGMALRSHDRSTRP 206          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: YDA6_SCHPO (Putative endonuclease C1F12.06c OS=Schizosaccharomyces pombe GN=SPAC1F12.06c PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.453e-20
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  369 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLL-RLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKN 704
            ++Y+ G+D+SF K  P  A   +V+ DL+   I+Y+DY  + +L+  YVPGFL+FRE    L LL+++    + F   +++VDGNG+LHP GFGLA H+GVL +L  +GV KN
Sbjct:   36 IRYVVGLDISFDKSSPK-AVSALVIYDLEQRMIIYKDYLCIEKLEEDYVPGFLSFREIKWYLPLLNHIP---HQFRIDIILVDGNGVLHPVGFGLACHLGVLLNLPVVGVAKN 144          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ANAVT (Endonuclease V OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=nfi PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.420e-20
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  261 IQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNVNI 713
            IQ+EL+ ++IT+D FT  +                  +Y+ GVDM F + D +I+   + VL    LQ+V    +      PY+PGFL+FRE P +L  L+ ++ +     P +++ DG G+ HPR  G+ASH+GVL ++ TIGV K++ I
Sbjct:   19 IQEELRHQVITQDQFTQPV------------------QYVAGVDMGF-EADGTISRAAVAVLSFPDLQVVETSLAYRPTSFPYIPGFLSFREIPAVLDALEKIQTK-----PDIILCDGQGIAHPRRLGIASHLGVLLNIPTIGVAKSLLI 145          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ANASP (Endonuclease V OS=Anabaena sp. (strain PCC 7120) GN=nfi PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.230e-19
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  261 IQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNVNI 713
            IQ+EL+ ++ITED FT  +                  +Y+ GVDM F + D +I+   + VL    LQ++  + +      PY+PGFL+FRE P +L  L  ++ +     P +++ DG G+ HPR  G+ASH+GVL ++ TIGV K++ I
Sbjct:   19 IQEELRHQVITEDQFTQPV------------------QYVAGVDMGF-EADGTISRAAVAVLSFPDLQVIETNLAYRPTSFPYIPGFLSFREIPAVLDALAKVQTK-----PDIILCDGQGIAHPRRLGIASHLGVLLNIPTIGVAKSLLI 145          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_DICTD (Endonuclease V OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=nfi PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.607e-19
Identity = 56/154 (36.36%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  258 RIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNVNIDY 719
            ++Q+EL K++I ED F                     L+YIGGVD S   E      G I +L  +TL++V    +L  +  PY+PGFL+FRE PV+L   + +K +     P +L+ DG G+ HPR  G+ASHIG + D+ +IG  KN+ + +
Sbjct:   18 KLQEELSKKIILEDKFKE-------------------LRYIGGVDTSSLGEK---IVGIITILVFKTLELVEISVALSEVNFPYIPGFLSFREGPVILRAWEKLKIK-----PDLLIFDGQGIAHPRRLGIASHIGYVLDVPSIGCAKNILVGF 144          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_DICT6 (Endonuclease V OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=nfi PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.607e-19
Identity = 54/150 (36.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  258 RIQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNV 707
            R+Q E+ +++I ED F                     L+Y+GGVD S S ED     G IVVL+  TL+++     + ++  PY+PGFL+FRE P++L   +N+K +     P +L+ DG G+ HPR  G+ASH+G + D+ +IG  K +
Sbjct:   18 RLQKEISEKIIKEDAFK-------------------NLRYVGGVDTS-SIEDK--IAGVIVVLEFNTLEVLEVSIEISQVNFPYIPGFLSFREGPIILKAWENLKIK-----PDLLIFDGQGIAHPRRLGIASHVGYVLDVPSIGCAKKI 140          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_CYAP8 (Endonuclease V OS=Cyanothece sp. (strain PCC 8801) GN=nfi PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.099e-19
Identity = 54/149 (36.24%), Postives = 81/149 (54.36%), Query Frame = 3
Query:  261 IQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNV 707
            IQ+ LKK++I ED F+                    + Y+ GVD+ F +++  +    I VL    L++V    + L    PY+PGFL+FRE P +L  L+ +K       P +++ DG G+ HPR  G+ASH+GVL DL TIGV K++
Sbjct:   19 IQENLKKKVILEDQFSE-------------------VNYVAGVDVGF-RDNYQLTQAAIAVLSFPKLELVETQIACLPTTFPYIPGFLSFREIPAILKALEKLK-----IPPNIILCDGQGIAHPRRLGIASHLGVLIDLPTIGVAKSL 142          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_PARUW (Endonuclease V OS=Protochlamydia amoebophila (strain UWE25) GN=nfi PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.675e-19
Identity = 57/150 (38.00%), Postives = 81/150 (54.00%), Query Frame = 3
Query:  261 IQDELKKRLITEDFFTWNLPXXXXXXXXXXXXXXVLLKYIGGVDMSFSKEDPS-IACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNV 707
            IQ EL  R+  ED F  N P                 ++ GG+D+S +  DP  I     ++LD + L + + +    R   PY+PGFL FREAP L+  L+++ K      P ++ VDG G+ HPR  G+ASHIGVL ++ TIGV KN+
Sbjct:   23 IQKELANRICLEDEF--NTP-----------------EFFGGMDVSNNLFDPKQIIYATAILLDSKMLSVQFHNSVSQRQTFPYIPGFLGFREAPALIDALESLPK-----LPDMIFVDGQGISHPRRLGIASHIGVLVNIPTIGVAKNI 148          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_THENN (Endonuclease V OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=nfi PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.360e-18
Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  372 KYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKN-VNIDYTAP----CGWSNTFWDKATT*CTXNNNEDINPLMGGSG 821
            KY+ GVD+SF K +  +A   IVV++  T +IV       ++  PY+PG LAFRE P+ L   + +K +     P V++ DG G+ HPR  G+ASH+G+  ++ TIGV K+ +   Y  P    C WS  + ++    C     E   P+    G
Sbjct:   37 KYVAGVDLSFPKREEGLAV--IVVMEYPTFKIVELVSERGKVDFPYIPGLLAFREGPLFLKAWEKLKTK-----PDVVVFDGQGIAHPRKLGIASHMGLFIEIPTIGVAKSRLYGTYREPENRRCSWSYLYDNEEIIGCVMRTREGSAPIFVSPG 184          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_AQUAE (Endonuclease V OS=Aquifex aeolicus GN=nfi PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.030e-18
Identity = 50/116 (43.10%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  378 IGGVDMSFSK--EDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNVNIDY 719
            IGG+D++F K  E+P+ A   +VV++L+TL+ VY+      +  PY+P FLAFRE P+LL L +  K +     P V  +DG G+ HPRG G+ASH GV     T+GV K+    Y
Sbjct:   30 IGGMDLTFEKINENPTRAWASLVVVELKTLKPVYQHVVKDIVDFPYIPTFLAFREMPLLLKLYETAKVK-----PDVYFIDGQGIAHPRGCGIASHFGVETGEVTVGVAKSKLFGY 140          
The following BLAST results are available for this feature:
BLAST of EY684548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
YQ020_HUMAN9.398e-2841.67Putative endonuclease FLJ39025 OS=Homo sapiens PE=... [more]
YDA6_SCHPO1.453e-2045.13Putative endonuclease C1F12.06c OS=Schizosaccharom... [more]
NFI_ANAVT9.420e-2035.76Endonuclease V OS=Anabaena variabilis (strain ATCC... [more]
NFI_ANASP1.230e-1935.76Endonuclease V OS=Anabaena sp. (strain PCC 7120) G... [more]
NFI_DICTD1.607e-1936.36Endonuclease V OS=Dictyoglomus turgidum (strain Z-... [more]
NFI_DICT61.607e-1936.00Endonuclease V OS=Dictyoglomus thermophilum (strai... [more]
NFI_CYAP82.099e-1936.24Endonuclease V OS=Cyanothece sp. (strain PCC 8801)... [more]
NFI_PARUW4.675e-1938.00Endonuclease V OS=Protochlamydia amoebophila (stra... [more]
NFI_THENN1.360e-1834.84Endonuclease V OS=Thermotoga neapolitana (strain A... [more]
NFI_AQUAE3.030e-1843.10Endonuclease V OS=Aquifex aeolicus GN=nfi PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684548 ID=EY684548; Name=EY684548; organism=Citrus sinensis; type=EST; length=945bp
TCCGACCCACGCGTCCGCTTTATGTTTCCACTGTACAATCCAGAAACAAT
TTTTTTTTTTTTTTTAAAAGGAAAAGAATTCAGGAGTGCAGCAGCCACAT
CATCGAAGAGAATTTCATTCAATCCCCGAGCAAATGTCTTCTTGTTACAG
ATCGTACATGGAAAATTATTGTGAAGAAGAAAGGGAAGCACTAGCATCGC
CCGATCCTGCTGCTCAAGCTCAGCTCAATCAGTGGACAGATTGGCAATGG
TAAATTCAGGATTCAGGACGAGCTAAAAAAGAGATTAATAACTGAAGATT
TTTTTACTTGGAATTTACCGAACTCCACAACCACAAACACGAGCACAAAA
GAAGAAGAAGAGGTGTTGCTGAAGTATATTGGTGGTGTTGATATGAGCTT
CTCAAAGGAAGATCCATCAATTGCATGTGGTTGCATTGTTGTGTTGGACC
TCCAAACTCTGCAAATAGTCTATGAGGATTATTCTCTTCTCAGGCTTCAA
GTGCCTTATGTCCCTGGTTTCCTTGCATTTCGCGAGGCTCCGGTTCTTTT
ATCGCTTCTGGATAACATGAAAAAGAGGGCTAACCATTTTTACCCACAGG
TATTAATGGTTGATGGCAATGGACTACTCCATCCTCGAGGTTTTGGCTTG
GCCAGTCACATCGGTGTTCTGGCGGATCTTACTACAATTGGGGTTGGAAA
GAATGTGAATATTGACTACACTGCCCCATGTGGATGGTCTAACACATTCT
GGGATAAGGCAACTACTTGATGCACAAGNAACAATAATGAAGATATTAAT
CCTTTGATGGGAGGCTCAGGATCCACATGGGGAAGGGGCAATGAGATCAA
CTCCAAACCATTTGAAGCCTAATTTTATTTCCGGTGGGCCCCTGCATTTC
CCCTGGATAGTGCTGCCATGGATGGTAAAAAGGACTGCCAGGAAT
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