EY684546

Overview
NameEY684546
Unique NameEY684546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1019
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY684546 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.689e-40
Identity = 71/160 (44.38%), Postives = 100/160 (62.50%), Query Frame = 1 
Query:  268 VIGPQYCLPYPVDLSIVRKFLTLTDGSFAVTDINDNLMFKVKEKIISLHDKRTLLDPAGNPIVTITEKVHAFISVLYRMRTS*Q*YC*FIFLCYFTTCIHMQVFSLHEKHFAFRGASTDTKDLLFTVERSSVIQLKTTLNVYLARNTKQDVCDFKIKGDW 747
            V+ P+YC PYP+D++IVRK ++LTDG+F +TD+N NL+FKVKE +  LHDKR LLD +G P+VT+ EK                                  + S+H++   FRG STD +DLL+TV+RSS++QLKT L+V+L  N  +  CDF++KG W
Sbjct:   27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREK----------------------------------MVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSW 152

HSP 2 Score: 37.7354 bits (86), Expect = 2.689e-40
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:  731 RSKATGTEKSCGVYAGESKTIVAQKDKKNNCWAMSWIKKDRVLL*QIYPNIN 886
            R K +  E+SC VYAGES  IVAQ  +K+   ++ ++ KD   +  +YPN++
Sbjct:  147 RVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSV-FLGKDNFSV-TVYPNVD 196
The following BLAST results are available for this feature:
BLAST of EY684546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH2.689e-4044.38UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684546 ID=EY684546; Name=EY684546; organism=Citrus sinensis; type=EST; length=1019bp
GNGGNGGNGGGGGGGCGGGGGTCTCTCAATATAAGTAAGNGGNNGGAATG
GTAGCCTGCAGTACCGGTCCGGAAATCCTTTTCAAAAGGAGGCGTCCGCA
ATTGNGATGTACCAGCAAAGGCTCGCAATCATATCATGGAGCAACCAATT
ACACAACACACTGCATATCAGACGCCACAGCAACCAAACCCACAGCAAAT
TCCACAGCAGCCAATTAATATTCCAGCGCCAACTCCAGCACCAACAATAT
ATTCCAATCCGGTTTCGGTAATCGGCCCTCAGTATTGCCTTCCTTATCCC
GTTGATCTATCCATCGTTAGAAAGTTTTTAACCCTCACCGATGGCAGTTT
TGCTGTCACTGATATTAATGACAATCTCATGTTCAAAGTGAAAGAAAAAA
TTATAAGCCTCCATGACAAGCGGACTCTACTTGATCCTGCTGGCAACCCT
ATTGTCACCATAACAGAGAAAGTACACGCTTTCATTTCCGTACTCTACAG
AATGCGGACTAGTTAACAATAATATTGCTAATTTATTTTTCTTTGTTATT
TTACTACTTGTATACATATGCAGGTTTTTTCCTTGCATGAGAAGCATTTT
GCATTCAGGGGGGCTAGCACAGACACTAAAGATCTTCTCTTTACTGTGGA
AAGATCTTCAGTGATCCAATTGAAGACCACTTTGAACGTCTACCTGGCAA
GAAACACCAAACAAGATGTTTGCGATTTCAAGATCAAAGGCGACTGGAAC
TGAAAAATCTTGTGGTGTATATGCTGGAGAATCAAAAACAATTGTTGCCC
AGAAGGACAAAAAAAACAACTGTTGGGCAATGTCTTGGATCAAAAAGGAC
AGGGTTCTCTTGTGACAGATATATCCAAACATAAACTAGGGGGCGTAAAA
GAGACCCTGAATGCGGGATCCCTCAAGGATAACCAGCGGGGCGAGGACGA
AACCCAGAGGACAAACCTTAAACCTGCAAATGCCTAACATAAAAGTGAAA
AAAAACGGTGAACCGCAAC
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