EY684529

Overview
NameEY684529
Unique NameEY684529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3542 contig Csv1_Contig3542:432..1268. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.246e-41
Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 3
Query:   21 SLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 308
            ++NK+LVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+VFFSI RDIKQRL+DTDSR+EP+TIKI+Q DQA G GQA QKSACCG
Sbjct:  120 NVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTDQAAGAGQATQKSACCG 215          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.517e-34
Identity = 76/97 (78.35%), Postives = 85/97 (87.63%), Query Frame = 3
Query:   21 SLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPS-TIKINQPDQAGGVGQAAQKSACCG 308
            ++NK+LVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVE+VFFSIARDIKQRLAD+D+R E   +I I   DQ+G   QAA KSACCG
Sbjct:  120 NVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQPSITIKPADQSG--NQAAAKSACCG 214          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.639e-17
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 3
Query:   15 TRSLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 305
            T S+NK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F S+A+DIK+R+ DT +  +P  +   QP    G     +K ACC
Sbjct:  118 TDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPN-EQPQVV---QPGTNLGANN-NKKKACC 208          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.134e-17
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 3
Query:   21 SLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 305
            S+NK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVE+ F  +A+DIK+R+ DT           N PD    +    +K+ CC
Sbjct:  120 SVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDTP----------NDPDHTICITPNNKKNTCC 203          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.299e-14
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 3
Query:   21 SLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRS---EPSTIKINQPDQ-AGGVGQAAQKSACC 305
            ++NK+LVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VE+ F ++A+D+  R+    +     +   +   QP +   G    AQ  +CC
Sbjct:  118 NVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARMEGEHANQQLLQQQQLSAAQPVRLTSGSPSPAQGKSCC 216          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.099e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 305
            + ++L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  115 VERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.099e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 305
            + ++L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  115 VERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.099e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 305
            + ++L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  115 VERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.099e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 305
            + ++L+GNK DMD+ KR VP  KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  115 VERMLLGNKCDMDD-KRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.875e-13
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACC 305
            + ++L+GNK DM E KR VP +KG+ +A E+GI+FFETSAK N+N+E+ F ++A DI ++    +  SE         D + G G    KS CC
Sbjct:  115 VERMLLGNKCDM-EDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSE-------NVDISSGGGVTGWKSKCC 200          
The following BLAST results are available for this feature:
BLAST of EY684529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ARA3_ARATH1.246e-4185.42Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU2.517e-3478.35Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8A_DICDI1.639e-1750.52Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI8.134e-1747.37Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPTV2_VOLCA1.299e-1440.40GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB10_PONAB1.099e-1342.55Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.099e-1342.55Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.099e-1342.55Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA1.099e-1342.55Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_CHICK1.875e-1342.55Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684529 ID=EY684529; Name=EY684529; organism=Citrus sinensis; type=EST; length=837bp
CCACGCGTCCGCCCACGCGTTCGCTCAACAAGGTTTTGGTAGGAAACAAA
GCTGACATGGACGAAAGCAAAAGGGCTGTGCCTACCTCAAAGGGTCAAGC
ACTTGCTGATGAGTATGGTATAAAATTTTTTGAAACCAGTGCAAAGACAA
ATCTAAATGTGGAGCAAGTTTTCTTTTCAATAGCAAGGGATATTAAACAA
AGGCTTGCTGATACTGACTCAAGATCTGAGCCCTCAACAATCAAGATTAA
TCAACCAGACCAGGCCGGGGGGGTTGGTCAAGCCGCCCAAAAATCGGCTT
GCTGTGGTGGTACTTAATAACCCATAACTTCTGAGGCACGTCCAGGTGTA
ACTCTTGGAAAGGGAAAAGGAAAAAAGAAAAAAAAAAAAAAAGAAACAAA
GAAAAGAAAAAACTAATTGTGATGACTGTGATGGATGCTTGTAATTTTTC
TTGTCATTCTTTTGAATCTTGTTTTAGCGTGTGAAATGTAGTTTTTAATT
ATTGAGAATTTCCATTGTGGCAAACAGCTCCTTCTATCTTGTGACTGACA
TATTTTTCCTTTTTTACCCATTTTCTTTTTCTGAAANNNNNNNCANNNCC
NGNNNNCNNNGCNGNNNGAGNAGAGAGAAGACGCCGGGGGAGGAATTTTG
GCAAAGAGACAAAACGCGGGGCAAGCAAGAGAGAGAAGTAAGAACGAAGA
AGGAAGCGGGGGTAGTGATAGAAAGGAAGCGAGACTTTATGAGGGGGCCC
TAAAAAAGAACAAACTTAAGACGCGGGGGTGAAAACAAAAGCCTTCTAAA
AGGCGCCAAAATAATATCGGCGGCGCCCTAATCACCA
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