EY684522

Overview
NameEY684522
Unique NameEY684522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7390 contig Csv1_Contig7390:1228..1934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY684522 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 44/109 (40.37%), Postives = 65/109 (59.63%), Query Frame = 3 
Query:   36 GHVGNLNYPSLSAVFQQYGKHKMSTHFIRTVTNVGDPNSAYKVTIRPPSGMTVTVQPEKLVFRRVGQKLNFLVRVEATAVKLSPGSSSMKSGKIVWSDGKHNVTSPIVV 362
            GH  +LNYP++    +   K      F R VTNVG P+S Y  T+R P G+ +TV+P+ L F +  QK +F V V+A   +++PG   + SG +VW   +H+V SPIV+
Sbjct:  641 GH-DSLNYPTIQLTLRS-AKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAK--QMTPG--KIVSGLLVWKSPRHSVRSPIVI 743
The following BLAST results are available for this feature:
BLAST of EY684522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
XSP1_ARATH4.825e-1440.37Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-A11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684522 ID=EY684522; Name=EY684522; organism=Citrus sinensis; type=EST; length=706bp
TGCAGACCACGCGTCCGAGCGGAGCAATTAGCGCTGGTCATGTTGGGAAT
TTGAATTACCCTTCATTGTCTGCAGTGTTTCAACAATACGGCAAGCATAA
GATGTCTACGCATTTCATTAGGACGGTGACTAACGTCGGAGATCCTAATT
CGGCTTACAAAGTTACAATCAGGCCACCCAGTGGCATGACAGTGACAGTG
CAGCCGGAGAAGCTTGTGTTTAGGCGGGTGGGACAGAAATTGAACTTTCT
GGTTAGAGTTGAAGCAACGGCAGTTAAGCTCTCCCCCGGGAGCTCAAGCA
TGAAGAGTGGTAAAATAGTATGGTCAGATGGGAAGCACAATGTCACTAGT
CCCATAGTCGTGACAATGCAGCAACCTCTCTAGTTTTGGTATCATAGGGT
TTTTCCCGGTTTTAGGAATTTTGCCTATCTTATTATATAGGATTATTATG
AATCATCTCCTAATTATGGTCTATATAAATGTATAATGAGAATGTATTTG
TGGGTGTTTTCTATTTCAAAAAGCTGCTGGTGGAGTGAAAAAAGAAGCTT
GGGATGAAGATGTACTTTGTATCTTAATATATGTTTTGTTGTAAGGTGAA
GAATCACAAATGGTTGTGTAAACAAAAATCCTGTGTGTGTTAAGACAATG
TCGAGAGTAATGAGAGAGGTCTCTCTTTCTCCTATTTTTAAAAAAAAAAA
AAAAAA
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