EY709051

Overview
NameEY709051
Unique NameEY709051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.360e-60
Identity = 117/179 (65.36%), Postives = 135/179 (75.42%), Query Frame = 3
Query:  111 GNSSLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            G  SL   DPE+  L+++EK RQCR +ELIASENF   A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  KR  ATSI+FES+ +++NP TG IDY  +   A  FRP L +
Sbjct:   45 GQESLSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLII 222          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.360e-60
Identity = 117/179 (65.36%), Postives = 135/179 (75.42%), Query Frame = 3
Query:  111 GNSSLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            G  SL   DPE+  L+++EK RQCR +ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN A YTA+L+PHDRIMGLDLP GGHLTHG Y S  KR  ATSI+FES+ +++NP TG IDY  +   A  FRP L +
Sbjct:   45 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLII 222          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.776e-60
Identity = 117/179 (65.36%), Postives = 135/179 (75.42%), Query Frame = 3
Query:  111 GNSSLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            G  SL   DPE+  L+ +EK RQCR +ELIASENF S A +EALGS L NKYSEG PG RYYGG E +DEIE LC+ RAL+ F LDP QWGVNVQPYSGSPAN AAYTA+L+PHDRIMGLDLP GGHLTHG Y S  KR  ATSI+FES+ +++NP TG IDY  +   A  F+P L +
Sbjct:   45 GQESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHG-YMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLII 222          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.504e-59
Identity = 114/178 (64.04%), Postives = 141/178 (79.21%), Query Frame = 3
Query:  114 NSSLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            N S+   DPEI+ L+ KEK+RQ   +ELIASENFTS AV+E++GS  TNKY+EG+PG RYYGGNE +D++ENLC  RAL+TF+L+P +WGVNVQPYSGS ANFAA+T +L+PHDRIMGLDLPSGGHLTHGY T   K+  ATSI+FES+ +QVN  TGY+DY  +   A  FRP L +
Sbjct:   31 NRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLDLPSGGHLTHGYQTD-KKKISATSIFFESMPYQVN-ETGYVDYNKMEANAALFRPKLLI 206          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.317e-58
Identity = 113/197 (57.36%), Postives = 142/197 (72.08%), Query Frame = 3
Query:   66 PENGKKEKMDPVNEWG---NSSLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            P+    +K +P   W    NS LE +DPEI  +IE EK RQ + +ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSP+NF  YTA+L+PHDRIM LDLP GGHL+HGY T   K+  A SI+FE++ ++++ STGYIDY  +   A  FRP L V
Sbjct:   34 PDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLDESTGYIDYDQLEKSATLFRPKLIV 229          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.407e-57
Identity = 108/159 (67.92%), Postives = 126/159 (79.25%), Query Frame = 3
Query:  123 LETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY 599
            L+  D E++ +I+KE  RQ   +ELIASENF S AV+EALGS L NKYSEG PG RYYGG E IDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   K+  ATSI+FES+A++VNP TGYIDY
Sbjct:   26 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMAYKVNPDTGYIDY 183          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.407e-57
Identity = 107/159 (67.30%), Postives = 126/159 (79.25%), Query Frame = 3
Query:  123 LETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY 599
            L+  D E++ +I+KE  RQ   +EL ASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T G K+  ATSI+FES+ ++VNP TGYI+Y
Sbjct:   26 LKDSDVEVYNIIKKESNRQRVGLELFASENFASQAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT-GKKKISATSIFFESMPYKVNPDTGYINY 183          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.838e-57
Identity = 107/159 (67.30%), Postives = 127/159 (79.87%), Query Frame = 3
Query:  123 LETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY 599
            L+  D E++ +I+KE  RQ   +ELIASENF S AV+EALGS+L NKYSEG PG RYYGG EFIDE+E LC+ RALQ +HLDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   K+  ATSI+FES+ ++V P TGYI+Y
Sbjct:   20 LKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMPYKVYPETGYINY 177          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.401e-57
Identity = 115/197 (58.38%), Postives = 139/197 (70.56%), Query Frame = 3
Query:   66 PENGKKEKMDPVNEWG---NSSLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            P     EK  P   W    N+ LE VDPEI  +IE EK RQ + +ELI SENFTS +V++A+GS +TNKYSEG PG RYYGGNE+ID  E LC+ RAL+ F LDP +WGVNVQP SGSPANF  YTA+L+ HDRIM LDLP GGHL+HGY T   K+  A SI+FE++ +++N STGYIDY  +   A  FRP L V
Sbjct:   34 PSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIMALDLPHGGHLSHGYQTD-TKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIV 229          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.401e-57
Identity = 107/159 (67.30%), Postives = 126/159 (79.25%), Query Frame = 3
Query:  123 LETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY 599
            L+  D E++ +I+KE  RQ   +ELIASENF S AV+EALGS L NKYSEG PG RYYGG EFIDE+E LC+ RALQ + LDP  WGVNVQPYSGSPANFA YTA++EPH RIMGLDLP GGHLTHG+ T   K+  ATSI+FES+ ++VNP TGYI+Y
Sbjct:   26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTD-KKKISATSIFFESMPYKVNPDTGYINY 183          
The following BLAST results are available for this feature:
BLAST of EY709051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_RABIT1.360e-6065.36Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN1.360e-6065.36Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN1.776e-6065.36Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC2_DICDI1.504e-5964.04Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYM_PEA6.317e-5857.36Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_RABIT1.407e-5767.92Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_PONAB1.407e-5767.30Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC_MOUSE1.838e-5767.30Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYM_FLAPR2.401e-5758.38Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYC_HUMAN2.401e-5767.30Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-105-F10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY709051 ID=EY709051; Name=EY709051; organism=Citrus sinensis; type=EST; length=769bp
CTCATTTATTCTTTTTTTCTGTCTAAATCCATTTTCATTTTCCCTTTTTT
TCGTTTTCAGTGAATCCAGAAAACGGAAAAAAAGAAAAAATGGATCCAGT
GAACGAGTGGGGCAACTCATCTCTTGAAACCGTGGACCCAGAAATTCACT
ACCTGATCGAGAAAGAGAAGCGCCGACAATGCCGCGCCATCGAGCTCATC
GCCTCCGAGAACTTCACCTCCTTCGCCGTTATCGAAGCCCTCGGCAGCGC
CCTCACCAACAAATACTCAGAGGGAATGCCCGGCAACCGTTACTACGGAG
GCAACGAATTCATCGACGAGATCGAGAATCTCTGCCGGTCGAGAGCTTTA
CAAACTTTCCATTTGGACCCCACCCAGTGGGGTGTCAACGTTCAGCCTTA
CTCCGGCTCGCCGGCCAACTTCGCCGCTTACACGGCGGTGCTCGAGCCTC
ATGACCGTATCATGGGGCTGGACTTGCCGTCCGGAGGGCATTTGACTCAT
GGGTATTACACTTCTGGCGGGAAAAGATATCGGGCGACTTCCATTTACTT
CGAGAGCTTGGCGCACCAGGTGAATCCGAGTACTGGGTATATTGATTACA
TCATTGGAGGAGAAGCGTTGGATTTTAGGCCGAATCTGACCGTTTGGCGT
GGAAATGATTTCGAGGGGAGTGACGATATGTATGAATTGGGGTGGTGGCG
GGACGGGGGGCGCGTGGTGGGCGTGGAGAGGGAGGGCGGCGAGGGCGGGG
GGGGCGTGGTGAGGGTCGG
back to top