EY679615

Overview
NameEY679615
Unique NameEY679615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length958
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 290.426 bits (742), Expect = 1.010e-77
Identity = 154/235 (65.53%), Postives = 177/235 (75.32%), Query Frame = 3
Query:  120 MATAHLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGSLLLTEGKQEKPFIGTVFAVGTGPLNEEGIRKPLSFAPGNPGMFSKLAGKGFPGE 821
            MA   LTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLI++EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAG LLLTE  +EKP IGTV AVG G L+EEG   PL  + G+  ++SK AG  F G+
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGK 235          

HSP 2 Score: 76.2554 bits (186), Expect = 2.995e-13
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  300 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELE-FNGANHLIVREDDVVGIL 572
            +KPL DRV +K+   EEKT GG+ L    + KP  G V+AVG G    + K+  + V  G+ V+YSKYAG + +  +G+N++ +R  DV+ IL
Sbjct:  160 LKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAIL 252          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.793e-66
Identity = 134/248 (54.03%), Postives = 170/248 (68.55%), Query Frame = 3
Query:  120 MATAHLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGSLLLTEGKQEKPFIGTVFAVGTGPLNEEGIRKPLSFAPGNPGMFSKLAGKGFPGE*EGPTQFVLK 851
            MA  HLT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLIV+EDD++GILETD++KDLKPLNDR+ IKVAE E  T+G LLL E  +EKP  GTV A G G L+EEG R PL    GN  ++SK AG  F G  +G    VL+
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGV-DGSDYMVLR 246          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.609e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 3
Query:  297 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 575
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.863e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  300 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 575
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.863e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  300 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 575
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.863e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  300 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 575
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.027e-21
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = 3
Query:  300 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDE 584
            IKPL DRV++K +  EEKT+ G+++P  A+ KPQ G V+AVG G+     K+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.988e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 3
Query:  297 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 575
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.988e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 3
Query:  297 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 575
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          
BLAST of EY679615 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.902e-21
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  297 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 575
            ++KPL DRVLVK    EEKT GG+F+P  A+ KP  GEVVA G GK     KL  ++VK G  V++SKYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAIIE 95          
The following BLAST results are available for this feature:
BLAST of EY679615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
CH10C_ARATH1.010e-7765.5320 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL6.793e-6654.0320 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_NATTJ4.609e-2252.1310 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_THEPX7.863e-2252.1710 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP37.863e-2252.1710 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR7.863e-2252.1710 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_RHOMR1.027e-2148.4210 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_DESVV2.988e-2152.1310 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH10_DESVH2.988e-2152.1310 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_DESVM3.902e-2153.1910 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-B07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679615 ID=EY679615; Name=EY679615; organism=Citrus sinensis; type=EST; length=958bp
GTTTTATCTTCTCGACCCTTCTTCAAATTTCAACTAGAAACCTTATCAAA
CTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTC
TCTCTGCATCTGCAAGCAGATGGCGACAGCTCACCTAACAGCGTCATCAA
TTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCT
TCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCG
TCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAA
TTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAG
AAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCA
AGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTA
AACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTAT
GCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGA
GGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGC
CCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGAGACAACT
GCTGGAAGTTTGTTGTTGACGGAAGGCAAGCAAGAGAAACCTTTCATTGG
AACGGTCTTTGCTGTTGGAACCGGTCCTCTAAATGAGGAAGGAATAAGGA
AACCTCTATCCTTTGCACCAGGGAACCCGGGGATGTTTTCCAAGTTAGCA
GGGAAAGGATTTCCAGGGGAATGAGAGGGACCCACTCAATTTGTTTTAAA
AACTTTCAAAAAGGGAGGGGTGGGGCCCCTCCTTATTTTGTCCTGGTTTT
TTACTTAGAGCGAAGGGCCTTTTAAAAGTAAAAAAAGGGAAATTGAAATT
TTTTAAGG
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