EY679613

Overview
NameEY679613
Unique NameEY679613
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY679613_ssr39 microsatellite EY679613_ssr39:39..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY679613 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.588e-14
Identity = 47/150 (31.33%), Postives = 77/150 (51.33%), Query Frame = 2 
Query:  428 LKQRIWKEMKLTWRIAFPSILSRITSFGQILVTQSFLGHVGEIELASFALVQSIFLRFVNGILLGMSSATETLCGQAFGAGHYHMMGIYLQPSWLVDCVTATIMLPVFILGTPIMNLLGPQKEIAKTGGGNSLVVKSLFLKISSFPLKNP 877
            LK  +W E KL W ++  SI+  + ++    VT  F GH+G ++LA  ++          GI+LGM+SA +T+CGQA+GA  Y  MGI  Q + ++    A  +  ++    PI+  +G    IA  G    +  + +  +I +F L  P
Sbjct:   45 LKLAVW-ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEG---QIFARGMIPQIYAFALACP 190
The following BLAST results are available for this feature:
BLAST of EY679613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH1.588e-1431.33Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-B05-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679613 ID=EY679613; Name=EY679613; organism=Citrus sinensis; type=EST; length=957bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAATATTATTATTAT
TACTTTGTGCTTGTGCGCAGAATCCATGAACAACGCTGCAGTGTAAATTA
GGCAGCTAACAAGGCCAAAAAAGAAACACACTGCATGTTGTTCCTGATTG
AGGGTACCTTTTTCGCTCTTCGCAAAGGGGGATGTTAAGTTGTTTTGGAC
TCTCTTTATTACAGCAAAAGCTGGAGGCTAAAGCGCTGGGTTTCTGAAAC
ACCCAATTTTTGATGGAATCAATTTAATTTTACAGAGAGAATGAGGTGTT
GGCTTTAAAAGAGTAACCAAATGTTCAATAATGCTTTTCAGCTTTTGGTA
TTGATAGAATAACAATGGACAACGGATTGGAAGAGCGAGAGAGGCTTCTG
GGATTCGAGGAACAGGAGAGGAATGATCTGAAACAGAGGATTTGGAAGGA
AATGAAGCTGACGTGGAGGATTGCATTTCCTTCTATACTTTCCAGGATTA
CTTCATTTGGACAAATTTTGGTGACACAGAGTTTTCTTGGACATGTTGGG
GAAATTGAACTCGCCTCATTTGCACTCGTTCAAAGCATCTTTTTGCGCTT
TGTTAACGGAATACTGCTGGGAATGTCAAGTGCAACAGAGACATTATGTG
GACAAGCATTTGGAGCAGGGCATTATCATATGATGGGAATTTACTTGCAA
CCATCGTGGCTAGTTGATTGTGTAACTGCTACAATAATGCTCCCCGTCTT
CATCCTTGGAACACCAATCATGAATCTGCTTGGCCCGCAAAAGGAAATAG
CAAAAACAGGGGGGGGGAATTCCCTGGTGGTTAAATCCCTTTTTTTAAAA
ATTTCCTCTTTCCCCTTGAAAAACCCAAATGGTCCTTAAAAACCCACGCC
CCAAAAAAAAATAGAATAAGGGGGGGGGGCTATTTAACGGGCTTTTTTTT
CCCGGCT
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