EY679608

Overview
NameEY679608
Unique NameEY679608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679608 vs. ExPASy Swiss-Prot
Match: YERG_SCHPO (Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe GN=SPAC2F3.16 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.032e-39
Identity = 72/149 (48.32%), Postives = 91/149 (61.07%), Query Frame = 1
Query:  154 GCKHYRRRCKIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG--RENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDS 594
            GC HY R CK++   C+E + CRHCHN+A          H L R  V+ ++C +C   QP AQ C  C   MG Y+C+ CK +DDD  K  +HCDDCGICRIG    ++YFHCK CG C   S+ N H CIE S   +CPIC EY+F+S
Sbjct:  141 GCSHYMRNCKVQCFDCHEWYTCRHCHNDACD--------HVLERPAVENMLCMICSKVQPAAQYCKYCKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRIGRGLGDDYFHCKTCGLCLPISVFNTHRCIERSTDCNCPICGEYMFNS 281          
BLAST of EY679608 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.108e-36
Identity = 65/147 (44.22%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  154 GCKHYRRRCKIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDS 594
            GC+HY R C ++APCC++++ CR CH+          + H+L R  VK+V C  C+  Q   Q C +C    GEY+C IC  +D D  K Q+HC+ CGICRIG +E++FHC +C  C +T+LR  H CIEN    +CPIC E +  S
Sbjct:   19 GCEHYDRACLLKAPCCDKLYTCRLCHDTN--------EDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTS 155          
BLAST of EY679608 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.043e-36
Identity = 64/147 (43.54%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  154 GCKHYRRRCKIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDS 594
            GC+HY R C ++APCC++++ CR CH+          + H+L R  VK+V C  C+  Q   Q C  C    GEY+CDIC  +D D  K Q+HC++CGICRIG +E++FHC +C  C + +L+  H CIEN    +CPIC E +  S
Sbjct:   19 GCEHYDRGCLLKAPCCDKLYTCRLCHDNN--------EDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKD--KKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTS 155          
The following BLAST results are available for this feature:
BLAST of EY679608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YERG_SCHPO1.032e-3948.32Uncharacterized RING finger protein C2F3.16 OS=Sch... [more]
ZN363_MOUSE3.108e-3644.22RING finger and CHY zinc finger domain-containing ... [more]
ZN363_HUMAN9.043e-3643.54RING finger and CHY zinc finger domain-containing ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-A12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679608 ID=EY679608; Name=EY679608; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGACAAACTAGAACCAACTACCCTATCTTCCCAAGTCAGGA
AAGTCTCTTTCTTCTTCGTTTCGTTGGCTTTGCCTTGCTTGCTCTGCAGA
TCCCCATGGAAGGCTCAGCTAATGAACGTATTACTTTTGGGAAGATGGGC
TATGGATGCAAGCATTATAGGAGGAGATGCAAGATTCGAGCTCCTTGTTG
CAACGAGATCTTTGATTGTCGCCATTGTCACAATGAGGCAGCGAGCATGT
TAAGAAACCCTTACGATCGGCACGAATTAGTGCGCCAAGATGTCAAACAA
GTTATTTGTTCTGTTTGTGACACCGAGCAGCCGGTTGCTCAAGTTTGTAC
TAACTGTGGCGTCAATATGGGGGAATATTTCTGTGACATCTGCAAATTCT
ACGATGATGATATTGAGAAGGGCCAGTTTCATTGTGACGATTGTGGGATC
TGCAGAATCGGAGGTCGTGAGAATTATTTTCACTGCAAGAGATGTGGGTC
TTGCTATTCCACTAGTTTGCGCAATAATCATTTGTGTATAGAGAATTCCA
TGCACCACCACTGCCCCATTTGTTATGAGTACCTATTTGACTCACTCAGG
AACACTACTGTTATGAAATGGTGGGCACACCATGCATTGGGAATGTTTAC
CATGAGATGATAAAGCGTGATAAATACTGTTGGTCCCCTATGGCTCCCAG
TCGGTGATTGACATGTCCAGGGACCTGGAAAAAAAAAAATGAAGGAAATA
AAACCCACTGGTGATGCCTGAAGACTACCCGGCCCAAAAAAGGTTTGGGT
TCCCATGCCATGGACTGGCATGACCCCACTCGAGGGTTTTCTTCCCTTAA
AATTGGGGCAAAAAATGTGGATCTCCTGGAAAAACCCCTAAAAAAACCCC
CCCCTAAATTGTGCCCCCCCCC
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