EY679606

Overview
NameEY679606
Unique NameEY679606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length957
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 7.441e-97
Identity = 181/216 (83.80%), Postives = 188/216 (87.04%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLL 637
            INPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR+     W  +   +    K       P   EQP+MT++KLL
Sbjct:  184 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRK-----WVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLL 394          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 1.074e-95
Identity = 176/217 (81.11%), Postives = 188/217 (86.64%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR+     W      E    +       P   EQP+MT+EKL+E
Sbjct:  175 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRK-----WVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLME 386          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 3.126e-95
Identity = 177/217 (81.57%), Postives = 188/217 (86.64%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR+     W  +   +    K       P   EQP+MT++KLL+
Sbjct:  184 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRK-----WVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQ 395          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 6.964e-95
Identity = 178/213 (83.57%), Postives = 187/213 (87.79%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELKGNTPQHSEQPRMTLEKLLE 640
            I+PIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR+           ++    K   P   EQP+MT+EKLLE
Sbjct:  184 ISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTF-EQPKMTIEKLLE 395          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 1.188e-94
Identity = 174/213 (81.69%), Postives = 187/213 (87.79%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELKGNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR+  +     +  +     K  +P   +QP+MT+EKLLE
Sbjct:  181 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSK-ESPPTFDQPKMTIEKLLE 392          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.313e-93
Identity = 173/217 (79.72%), Postives = 187/217 (86.18%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR+     W      E    +     + P   EQP+MT+EKLLE
Sbjct:  174 INPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRK-----WVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLE 385          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 2.926e-93
Identity = 176/217 (81.11%), Postives = 186/217 (85.71%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR+     W      E    K     + P   EQP+MTLEKLLE
Sbjct:  183 INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRK-----WVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLE 394          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 2.926e-93
Identity = 185/279 (66.31%), Postives = 206/279 (73.84%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELKGNTPQHSEQPRMTLEKLLELRKHDLCRTKKM*KKFIWVTVI*VGPLLVKQCRFLSKWEIFFGKPPPQMNFPISLKGVPVPHAKKF 838
            INPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR+        K  +     +   P   EQP MT EKL+E     +   + + +  +  T +    L       + +   F+GK   Q+N P+  +G   P A+ F
Sbjct:  184 INPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVF-EQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGR-GTFYGKGAQQVNLPVP-EGCTDPVAENF 459          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 8.513e-93
Identity = 174/217 (80.18%), Postives = 186/217 (85.71%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG +CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR+     W      E    K     + P   EQP+MT+EKLLE
Sbjct:  188 INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRK-----WVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLE 399          
BLAST of EY679606 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 1.112e-92
Identity = 175/217 (80.65%), Postives = 185/217 (85.25%), Query Frame = 2
Query:    2 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRELDLWYWCWKHWQEPCELK----GNTPQHSEQPRMTLEKLLE 640
            INPIMMSAGELESGN GEPAKLIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR+     W  +   E    +       P   +QP+MT+EKL+E
Sbjct:  172 INPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRK-----WVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLME 382          
The following BLAST results are available for this feature:
BLAST of EY679606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_LARTR7.441e-9783.80Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.074e-9581.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR3.126e-9581.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO6.964e-9583.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.188e-9481.69Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.313e-9379.72Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.926e-9381.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.926e-9366.31Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC8.513e-9380.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.112e-9280.65Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-A10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679606 ID=EY679606; Name=EY679606; organism=Citrus sinensis; type=EST; length=957bp
CATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTG
GAGAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATT
ATCAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGG
AGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAATGG
TTAACGCCACACTCATGAACATTGCTGATAACCCAACTTGTGTCCAACTC
CCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATCATAGTCAC
CGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTA
TGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGC
AAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCT
TGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGG
CCAGAGTCTATGATGATGAGGTGAGGGAATTGGATCTCTGGTATTGGTGT
TGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAACACCCCCCAACA
TTCCGAGCAACCAAGGATGACATTGGAAAAGCTGCTCGAGTTACGAAAAC
ATGATTTGTGCAGAACAAAGAAAATGTGAAAAAAATTCATTTGGGTGACA
GTTATTTGAGTGGGGCCCCTCTTGGTGAAGCAATGCAGATTCCTATCCAA
ATGGGAAATTTTCTTTGGCAAACCACCCCCACAAATGAATTTTCCCATTT
CCCTGAAAGGAGTACCGGTTCCTCATGCCAAAAAATTTTTATCCCACCTG
GCAAAAATGGAGGTAGGAAACCCGCCCAAAACCCCCCTTTTGGGCCTTTT
TTTTCAAAGGGGTGAAAAAAAGTTGCCACCCTTTTTGCTCTTAAAAAAGT
GTAGAAA
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