EY664158

Overview
NameEY664158
Unique NameEY664158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.678e-29
Identity = 67/170 (39.41%), Postives = 99/170 (58.24%), Query Frame = 3
Query:   15 EEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            EE +     F S +GDH+TL+N+YR        + +  +K+        WCK+NF+NS+++    ++ +Q+R    +M   I+S   D+   RRCLA S F++ A  QP+GTY      Q V IHPSSVLF  KP C+V+ EL+ TN  Y+R++  ID  WL E AP+Y+
Sbjct:  543 EEVQGVRKKFISSEGDHMTLLNIYRTF------KNLGGNKD--------WCKENFVNSKNMTLVAEVRAQLRDICLKMSMPIASSRGDVESVRRCLAHSLFMSTAELQPDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEYF 698          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.882e-29
Identity = 64/165 (38.79%), Postives = 94/165 (56.97%), Query Frame = 3
Query:   42 FASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            F   +GDHLTL+ VY +               K  K    WC +NFI +RSLR A+DI  Q+ G +++    + SCG+  +  ++ + + FF NAA K P+  YR L   QVV IHPSS LF  +PE +V++EL+ T  +Y+R +T ID  WL E AP ++ + +
Sbjct: 1059 FHQTEGDHLTLLAVYNSW--------------KNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSD 1209          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.882e-29
Identity = 64/165 (38.79%), Postives = 94/165 (56.97%), Query Frame = 3
Query:   42 FASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            F   +GDHLTL+ VY +               K  K    WC +NFI +RSLR A+DI  Q+ G +++    + SCG+  +  ++ + + FF NAA K P+  YR L   QVV IHPSS LF  +PE +V++EL+ T  +Y+R +T ID  WL E AP ++ + +
Sbjct: 1035 FHQTEGDHLTLLAVYNSW--------------KNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSD 1185          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.423e-28
Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 3
Query:   15 EEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            + A      F  P+GDHLTL+ VY +               K     + WC +NFI  RS++ A+DI  Q+ G +++    + SCG D+   ++ + + FF NAA + P+  YR L  GQ V IHPSS  F+ +PE +V++EL+ T  +Y+R +T ID  WL E AP ++
Sbjct: 1001 DHADQKKAKFHQPEGDHLTLLAVYNSW--------------KNHHFSQPWCFENFIQVRSMKRAQDIRKQLLGIMDRHKLLMVSCGRDVSRVQKAICSGFFRNAAKRDPQEGYRTLTDGQNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSFF 1156          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.203e-27
Identity = 61/178 (34.27%), Postives = 98/178 (55.06%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            R +  +A      F  P+GDHLTL+ VY A               K +     WC +NFI SRSLR A+D+  Q+   +++    + + G++    R+ + A FF + A K P+  YR L   Q V IHPSS LF+ +P+ +++++L+ T  +Y+R +T ID  WL ELAP+++ + +
Sbjct:  972 REKQAQADQKRAKFFQPEGDHLTLLAVYEAW--------------KAKNFSGPWCFENFIQSRSLRRAQDVRKQLLSIMDKYKLDVVTAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSD 1135          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.571e-27
Identity = 60/167 (35.93%), Postives = 92/167 (55.09%), Query Frame = 3
Query:   42 FASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN*N 542
            F  P+GDHLTL+NVY +               K  K    WC +NF+ +RSLR A+D+  Q+   +++    I S G +    ++ + + FF NA+ K P   Y+ L  GQ V IHPSS LF   P+ ++++EL+ T  +Y+R +  ID  WL ELAP+++   + N
Sbjct:  978 FFQPEGDHLTLLNVYESW--------------KNSKFSNPWCFENFVQARSLRRAQDVRKQLITIMDRYKLDIISAGRNYTKIQKAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFNRNPDWVIYHELVMTTKEYMREVCTIDPKWLVELAPKFFKTSDPN 1130          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.571e-27
Identity = 63/170 (37.06%), Postives = 92/170 (54.12%), Query Frame = 3
Query:   15 EEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            +E ++    F S +GDH+TL+N+YR        +               WCK+NF+NS+++    ++ +Q+R    +M   I S   DM   RRC+A S F+N A  Q +GTY      Q V IHPSSVLF  KP C+V+  L+ TN  Y+R++  +D  WL E AP Y+
Sbjct:  534 DEVQSVRKKFISSEGDHITLLNIYRTFKNIGGNKD--------------WCKENFVNSKNMLLVAEVRAQLREICLKMSMPIMSSRGDMESVRRCMAHSLFMNTAELQTDGTYATTDTHQPVAIHPSSVLFHCKPACVVYTSLLYTNKCYMRDLCVVDAEWLYEAAPDYF 689          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.123e-24
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            + ++  A NA  +F  P GDHL L+NVY    E                   +WC +NF+  RS+R ARD+  Q+ G +E++   +SSC  D I  R+ + A +F + A     G YR +   Q V IHP+S LF  +P  ++++EL+ T  +++R +  I+  WL E+AP YY
Sbjct:  861 KDKVVHADNARVNFFLPGGDHLVLLNVYTQWAE--------------SGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1019          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.123e-24
Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            + ++  A NA  +F  P GDHL L+NVY    E                   +WC +NF+  RS+R ARD+  Q+ G +E++   +SSC  D I  R+ + A +F + A     G YR +   Q V IHP+S LF  +P  ++++EL+ T  +++R +  I+  WL E+AP YY
Sbjct:  858 KDKVVHADNARVNFFLPGGDHLVLLNVYTQWAE--------------SGYSSQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARLTRSG-YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYY 1016          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.066e-24
Identity = 56/169 (33.14%), Postives = 95/169 (56.21%), Query Frame = 3
Query:   18 EARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            EA +    F  P GDHLTL+NVY              ++ +      ++CK NF++ R L+ ARD+ SQI    +++G ++ SC  D  + R+   + FF+NAA +  +  Y+ + GG  V IHPSS L+  + E ++++ ++ T+ +Y+  +T I+  WL E+AP +Y
Sbjct:  945 EADSKKAKFHHPYGDHLTLLNVY--------------TRWQQANYSEQYCKTNFLHFRHLKRARDVKSQISMIFKKIGLKLISCHSDPDLIRKTFVSGFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLYGKEYEYVMYHSIVLTSREYMSQVTSIEPQWLLEVAPHFY 1099          
The following BLAST results are available for this feature:
BLAST of EY664158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHX33_HUMAN1.678e-2939.41Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
DHX8_MOUSE4.882e-2938.79ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN4.882e-2938.79ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
MOG5_CAEEL2.423e-2836.47Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_ARATH1.203e-2734.27Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_DICDI1.571e-2735.93ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]
DHX33_MOUSE1.571e-2737.06Putative ATP-dependent RNA helicase DHX33 OS=Mus m... [more]
DHX16_PANTR2.123e-2434.48Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_HUMAN2.123e-2434.48Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP22_YEAST8.066e-2433.14Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664158 ID=EY664158; Name=EY664158; organism=Citrus sinensis; type=EST; length=933bp
CCCGGGGAGAATTAGAAGAGGCAAGAAATGCAATGACATCTTTTGCAAGT
CCAGATGGAGATCACCTCACTTTGATTAATGTATATCGAGCATCTGATGA
GTTCTTGGAGAAGAGAAAGATGGAAATTAGTAAGGAAAAAACTGAAAAAA
TTCTGAGAAAATGGTGCAAGGATAATTTTATTAATAGCCGGTCTTTGAGG
CATGCTCGGGACATCCACAGTCAAATTCGAGGACATGTTGAACAAATGGG
TTTTCGTATATCTTCTTGTGGAGAAGACATGATTATGTTCCGCAGATGTC
TTGCTGCTTCCTTTTTCCTCAATGCAGCTTTGAAGCAGCCCGAGGGGACA
TACAGGGCTTTGGCAGGTGGTCAGGTGGTGCAGATTCATCCTTCTTCTGT
CTTATTTCGAGCAAAACCAGAGTGCATAGTATTCAATGAACTGATCCAAA
CTAATCACAAATATATCCGGAACATAACTAGAATTGACTACTTATGGTTG
ACTGAATTGGCTCCTCAATATTATACCATGCAGAATTAAAATATTCAATT
ACAAACAGTAACAGCTTGATGTCTCAATTCTATCTCGCATCATCGAAATG
GGAGCAAGTAGATCAAAATTCTTTCACTGATTTACATTGCTGGTTGTTGG
GAGCAAGTAAATGTTTCTGCTGGGAACTATGGGGAAGTCAAAACTTGATG
TTAAGATGCATTACTGGTCCTATTCTTTTGAAAATGTTGCTGAACAGGTG
GCTGCAAAAGTTTGAGAAGCTTCGCTGCACTACAAACAGGCTGGGGTGGT
GCCCATGATTTTACATGAGCTACTTTGTGGGCCTCACAAGTTGGGTTGGA
AAATCTGCTGTTTGGGGTCAGAATCAGGATGTTTGAATGATTGAGAAATG
ACACTCACCGATTTGGGCTAGTTACCGCGCCTA
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