EY664157

Overview
NameEY664157
Unique NameEY664157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY664157_ssr127 microsatellite EY664157_ssr127:127..141. BLAST: Citrus ESTs to Prunus persica proteins V1
EY664157_ssr186 microsatellite EY664157_ssr186:186..201. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY664157 vs. ExPASy Swiss-Prot
Match: NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.594e-72
Identity = 141/178 (79.21%), Postives = 159/178 (89.33%), Query Frame = 1
Query:  310 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKGELFDMGAXV-XEPTADENVQVASSMSNQELIDAGEETMDETDQAIKRSQMGGEQTXERGTKTXTH*K 840
            MA++L MSPQLEQIHGEIRD+FRAL+NGFQ+LDKIKDS RQ+KQLEELT +MRECKRL+KE DRE+KDEEARN PEVNKQLNDEKQSMIKELNSYVALRKTYM++LGNKK ELFDMGA V  EPTA+ENVQVASSMSNQEL+DAG + MDETDQAI+RS+   EQT E GT+T  + K
Sbjct:    1 MASNLPMSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVSGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSKQVVEQTLEVGTQTAANLK 178          
BLAST of EY664157 vs. ExPASy Swiss-Prot
Match: NPS12_ARATH (Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.383e-68
Identity = 132/178 (74.16%), Postives = 156/178 (87.64%), Query Frame = 1
Query:  310 MATDLQMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKGELFDMGAXV-XEPTADENVQVASSMSNQELIDAGEETMDETDQAIKRSQMGGEQTXERGTKTXTH*K 840
            MA++L MSP LEQIHGEIRD+FRAL+NGFQ+LDKIKDS+RQ+KQLEEL  +MR+CKRL+KE DRE+KD EARN P+VNKQLNDEKQSMIKELNSYVALRKTY+N+LGNKK ELFD GA V  EPTA+ENVQ+AS+MSNQEL+DAG + MDETDQAI+RS+    QT E GT+T ++ K
Sbjct:    1 MASELPMSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGVSGEPTAEENVQMASTMSNQELVDAGMKRMDETDQAIERSKQVVHQTLEVGTQTASNLK 178          
BLAST of EY664157 vs. ExPASy Swiss-Prot
Match: NPS11_ARATH (Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.117e-44
Identity = 94/168 (55.95%), Postives = 123/168 (73.21%), Query Frame = 1
Query:  328 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSL--GNKKGELFDMGAXVXEPTADENVQVASSMSNQELIDAGEETMDETDQAIKRSQMGGEQTXERGTKT 825
            +S +L +I G+I D FRALSNGFQKL+KIKD+NRQ++QLEELT +MR+CK LIK+ DREIK  E+ N    N+ LND +QSM+KELNSYVAL+K Y ++L   NK+ +LFD      E   +ENV +AS+MSNQEL+D G   MD+TDQAI+R +   ++T   GT T
Sbjct:    7 VSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEHMEENVLLASNMSNQELMDKGNSMMDDTDQAIERGKKIVQETINVGTDT 171          
The following BLAST results are available for this feature:
BLAST of EY664157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NPS13_ARATH1.594e-7279.21Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NP... [more]
NPS12_ARATH2.383e-6874.16Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NP... [more]
NPS11_ARATH9.117e-4455.95Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NP... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664157 ID=EY664157; Name=EY664157; organism=Citrus sinensis; type=EST; length=929bp
CCCACGCGTCCGCGGACGCGTGGGTTTTAATTTTTTAACTTTTATTTTCC
AAAATTCCTGAAGTTCTCTCGGCATCAGCCCAAAATTTCCCCCTTTTTGC
TATATTTCAATGGTATTGATATCTACATTATTATTATTATTTGTTTTTTA
TTAAAAGGAAAGAGGAGTACTGTTCGGTGAGGGTTTTAATTAATTAATTA
ATTTTTTAAATTTCCTAAAAACTCCCAGCAACTGAGAGGATCGAAGCAAT
TTGAATGCCGTGGTGATAATTTATTTGCCGGAGATTTTGATTGATTTTCC
GGCGTAATTATGGCGACCGATTTGCAGATGAGCCCTCAGTTGGAGCAGAT
CCACGGCGAAATTCGCGATAATTTTCGAGCTCTCTCAAATGGCTTCCAGA
AGCTGGATAAGATCAAAGATTCCAACCGACAAACTAAGCAGCTGGAAGAA
CTCACTGGGAGGATGAGGGAGTGTAAAAGATTAATTAAAGAGATGGATCG
TGAAATTAAAGATGAAGAAGCCCGAAATCCTCCGGAAGTCAATAAGCAAC
TCAATGACGAGAAGCAATCTATGATAAAAGAGTTGAACTCTTATGTTGCA
TTGAGGAAAACGTATATGAATAGCCTTGGTAATAAGAAAGGTGAACTCTT
TGATATGGGAGCGGNAGTCANTGAACCTACAGCTGATGAAAATGTNCAAG
TGGCATCATCCATGTCAAATCAAGAACTAATTGATGCTGGGGAAGAGACA
ATGGATGAGACTGATCAGGCTATTAAACGTTCTCAAATGGGTGGTGAACA
AACATTNGAAAGGGGGACCAAAACTGNCACACATTAAAAGGTCAACTGAT
CAAATGGGCCGTATNGTTATGAGCTAGATCCATTCAATTCTAATTAGAAA
GCTNCCAACTCGTGAAGAAATTGAAGACA
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