EY664120

Overview
NameEY664120
Unique NameEY664120
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY664120 vs. ExPASy Swiss-Prot
Match: Y1689_ARATH (Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.651e-54
Identity = 120/216 (55.56%), Postives = 126/216 (58.33%), Query Frame = 3 
Query:  237 MSEGHKFQLGTVGAXXXXXXXXXXXXXCNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTNLCAQIMTNTXQKMFKVSSTNCCISRAPIRALLCSSLAHX*MG-FKQQNVFAF 881
            MSEG KFQLGT+GA             CNKALIS+LGFTFATTLTSWHLLVTFCSLHVALWMK+FEHKPFDPRAVMGF                     FYQMTKLAIIPCT+LLETLFFRKKFSR IQ S          ATVTD                T   AQIMTNT QK FKVSST       P +A+          G    QNVFAF
Sbjct:    1 MSEGQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVALWMKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFRKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQAITLFVTGPFLDGLLTNQNVFAF 216
The following BLAST results are available for this feature:
BLAST of EY664120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1689_ARATH2.651e-5455.56Uncharacterized membrane protein At1g06890 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-B02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664120 ID=EY664120; Name=EY664120; organism=Citrus sinensis; type=EST; length=952bp
CCACGCGTCCGAATTGATATTTCTTTTAAACTAATTTAGCAGATCTAGGG
TTTTTCAATCTGAAACTCTCGTAAATCGCAATTCAATTCCGCTTATCTAT
TTTGTTGAATTTGATTGTGCCATCGTCATTTTTACAGTTCATCTTGTTCG
GCTGCTGGTTGCTTTGCTGAAATTTTTTGACAAATTATGATTTAAAATAA
TATCGGGATCAAAGTGGAAGAGAGGCGAAGAATAAGATGAGTGAAGGGCA
TAAGTTCCAGTTAGGAACAGTTGGGGCATTGAGTTTGTCGGTGATTTCAT
CAGTGTCTATTGTGATTTGCAACAAGGCGCTTATTAGCTCACTTGGATTC
ACTTTTGCCACAACTTTGACAAGCTGGCATCTTCTTGTTACTTTTTGTTC
GCTTCATGTGGCATTATGGATGAAATTATTTGAGCACAAGCCTTTTGATC
CAAGAGCTGTAATGGGATTTGGGGTATTGAATGGGATATCTATTGGGCTG
TTGAATCTTAGCTTGGGTTTCAATTCTGTTGGTTTCTACCAGATGACGAA
ACTTGCAATCATCCCCTGCACCATTCTTTTGGAGACTCTNTTCTTCAGGA
AGAAATTCAGTAGGAATATCCAACTTTCATTAGTCATCCTTCTTGTGGGT
GTGGGAATTGCAACTGTAACTGATCTTCAGCTCAATGTTTTGGGTTCTGT
CTTGTCGCTGCTTGCAGTTCTTACAAACTTGTGTGCTCAGATTATGACCA
ATACCATNCAGAAGATGTTCAAAGTTTCTTCAACCAACTGCTGTATCAGT
CGTGCCCCTATCAGGGCTTTACTTTGTTCATCATTGGCCCATTNCTAGAT
GGGCTTTAAACAACAAAATGTTTTTGCATTCAATACACCCCTNACGTGCT
GTNCTNCATGNNNCATCGGGCTTGATATCCGTTCTGTAACTTANCACGTT
TT
back to top