EY664117

Overview
NameEY664117
Unique NameEY664117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:10..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.775e-59
Identity = 112/122 (91.80%), Postives = 120/122 (98.36%), Query Frame = 3 
Query:   87 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 452
            MA+KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANV  AELKEKLARMY+VKDPN+IFVFKFRTHFGGGKS+GFGLIYD+V+SAKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.082e-56
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 3 
Query:   87 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 452
            MA+KAVTIRTR FMTNRLL+RKQFVIDVLHPGRANV  AELKEKLARMY+VKDPN+IF FKFRTHFGGGKS+G+GLIYD+V++AKKFEPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGV
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGV 122
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3 
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V   E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3 
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V   E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3 
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V   E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3 
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V   E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3 
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V   E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.049e-39
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 3 
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V   E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.565e-39
Identity = 82/116 (70.69%), Postives = 95/116 (81.90%), Query Frame = 3 
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VTIRTRKFMTNRLL RKQ VIDVLHPG+A V   E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL ++GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRG 119
[Close]
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_MACFA (40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 82/116 (70.69%), Postives = 94/116 (81.03%), Query Frame = 3 
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VTIRTRKFMTNRLL RKQ VI VLHPG+A V   E++EKLA+MY    P+ IFVF FRTHFGGGK+TGFG+IYDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKTT-PDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
The following BLAST results are available for this feature:
BLAST of EY664117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH6.775e-5991.8040S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH1.082e-5687.7040S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT2.049e-3971.5540S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB2.049e-3971.5540S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE2.049e-3971.5540S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU2.049e-3971.5540S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN2.049e-3971.5540S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN2.049e-3971.5540S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA4.565e-3970.6940S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_MACFA1.328e-3870.6940S ribosomal protein S24 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-A11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664117 ID=EY664117; Name=EY664117; organism=Citrus sinensis; type=EST; length=730bp
GCCGGNATTCAAAGCTCGACCCACGCGTCCGCGCCTCTCTGGCTATATCT
TTGTCGAGGATTCAGCCGACTTTTAACCAACCAACAATGGCGGACAAGGC
TGTCACCATTCGAACTAGGAAGTTCATGACCAACCGTCTCCTTTCCAGGA
AGCAATTCGTTATTGATGTTCTTCATCCTGGCAGGGCCAATGTTTTCATA
GCTGAGTTGAAGGAGAAGTTGGCAAGGATGTATGATGTGAAGGACCCCAA
CTCAATCTTTGTTTTTAAGTTTCGAACTCACTTTGGAGGTGGGAAATCTA
CCGGCTTTGGTCTGATCTATGATTCAGTTGACAGTGCTAAGAAGTTTGAG
CCCAAGTACAGGCTTATCAGGAATGGACTTGATACCAAGGTAGAGAAGTC
AAGGAAGCAGATGAAGGAAAGGAAGAACAGGGCTAAGAAGATCCGTGGTG
TAAAGAAGACCAAGGCCTCAGATGCTGCCAAGAAGAAGTGAGCAATTGGA
GATTCTTCTGTAGTCTCGAAGCCAATTTTCTGTGATGGAGTTTCTATAAT
AGTCTTTTTTTTTTTTTGGGTTTAGTTCCTGAAATGAAATCTAGTGTGTT
GTGGATTTTGGTGCCATTGGATGTTTAGTTATATTTGCAGATTTTGAGTA
CTCCCCAAAAGACATTTTTGAGTATTGAATGGCAATACATTCGTCTTTAA
CCCTGGGTTTAAAAAAAAAAAAAAAAAAAA
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