EY663274

Overview
NameEY663274
Unique NameEY663274
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7824 contig Csv1_Contig7824:1..889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY663274 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.784e-24
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  262 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 657
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE++     R FP+
Sbjct:  178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDEDCREFPW 307          
BLAST of EY663274 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.555e-24
Identity = 55/132 (41.67%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  262 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 657
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D   ++F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE++     R FP+
Sbjct:  178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDEDCRGFPW 307          
BLAST of EY663274 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.683e-23
Identity = 54/132 (40.91%), Postives = 80/132 (60.61%), Query Frame = 1
Query:  262 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 657
            LL  +G  ++ S LEG    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L++L P  +    T    VE++     R FP+
Sbjct:  178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEV--ITRQGRVEVLNDEDCREFPW 307          
BLAST of EY663274 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.235e-22
Identity = 53/133 (39.85%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  262 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-VELIYKYGIRAFPF 657
            L+  +    + S LEG    +YFSA W PPC + T VLV+ Y +++ +G  FE+V VS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L P   K +     G VE++     + FP+
Sbjct:  157 LIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP---KGEVITRQGRVEVLRDIDCKEFPW 286          
BLAST of EY663274 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.742e-20
Identity = 47/104 (45.19%), Postives = 65/104 (62.50%), Query Frame = 1
Query:  262 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 573
            LL  +      + LEG    +YFSA+W PPC + T VLV+ Y +++  G  FE+VFVS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L
Sbjct:  161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILL 264          
BLAST of EY663274 vs. ExPASy Swiss-Prot
Match: TYPX_TRYBB (Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.168e-16
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  262 LLNQHGTQVKVSDLEGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 573
            LL++ G +V +  L GK   LYFSA+W PPC  FT VL + YE+  +   +FEVV +S DE+ + F++Y   MPWLA+P+    T   L + F +E IP L+ +
Sbjct:   14 LLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI 115          
The following BLAST results are available for this feature:
BLAST of EY663274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NXN_MOUSE5.784e-2441.67Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_BOVIN7.555e-2441.67Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
NXN_HUMAN1.683e-2340.91Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_XENLA9.235e-2239.85Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
NXN_DANRE1.742e-2045.19Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
TYPX_TRYBB1.168e-1642.31Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-053-D08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663274 ID=EY663274; Name=EY663274; organism=Citrus sinensis; type=EST; length=889bp
TGCCTCGACCCCGCGTCCGGCATTTGATCTGCGACAGTGTTAATCTTTTT
GTAATACATCGAGAGAGAAATTGGAAAAAGAAAAAAAGAGAGAAAAAAAT
AAAATTAAAAAAAAAAAAGGAGAGTGATGAGAAATGAAGTGAGGTTGGAG
GAAGACGAGGAGCAGCTGATGACGACAAATGGAAGCTCTATCTCTGAGCA
TCAGAAGATCTCAACCTCATCAAGATTTTCAAGCCTCTTGGCCTCTAAAG
ATCGTGACTATCTTCTCAATCAACATGGCACTCAGGTGAAAGTCTCTGAT
CTTGAAGGCAAGGTCACAGCCCTTTACTTCTCAGCTAACTGGTATCCGCC
GTGTGGAAACTTCACCGGAGTTCTTGTTGACGTTTACGAAGAGCTGAGGA
ACAATGGATCCGATTTTGAGGTTGTCTTTGTGTCATCTGATGAAGACTTG
AATGCCTTCAACAACTACCGTGCATGCATGCCATGGCTAGCAGTTCCATA
TTCGGATTTGGAAACAAAGAAGGCCTTGAACCGAAAATTTGACATCGAAG
GCATTCCTTGCTTGGTTGTGTTGCAACCTTATGATGATAAAGATGATGCA
ACATTGCATGATGGAGTTGAGCTCATTTACAAGTATGGGATCAGAGCTTT
CCCATTTACTAAAGAGAAGCTTGAGGAATTGCAAAAGGAAGAAAAAGAGA
AGCACGAACGCCAAACTTTAATTAATTTATTAACAAACCACGACAGAGGC
TATCTTTTGGGTCACCCTCCTGATGAAAGGTACCCGTATCTTCCCTGGTG
GGTAAAACGGTTGGGCTTTATTTCTCAGCCAGATGGTGCATTCCATGTGA
GAAATTCATGCCCTAAGTGCTCNTCATCTACCAGAAATA
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