EY662860

Overview
NameEY662860
Unique NameEY662860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY662860_ssr155 microsatellite EY662860_ssr155:155..166. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig261 contig Csv1_Contig261:1..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEML1_ARATH (GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.861e-78
Identity = 149/227 (65.64%), Postives = 176/227 (77.53%), Query Frame = 3
Query:  174 HSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI-NESAATTMPAESNPYVSPSPIEPSSSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKGVIPLSQLKAVNPLTSKASQLRIYPGHL-W*HHEFWXMG 848
            HSSDYAPYPK+DP DV PPP           P PI   +AATTMPAESNPYVSPSP    + +N ++SVK  L  WGK AA+ATK+AEDLAGN WQHLKTGPS+ADAAV RIAQ TK+LAEGGYEK+F+Q+FD +P+E+LLKTYACYLSTSAGPV+GV+YLST KLAF SD+PLSYK G++T WSYYK V+P +QLKAVNP TS+ +    Y   +   +HEFW MG
Sbjct:   28 HSSDYAPYPKLDPTDVTPPP-----------PQPIPTGAAATTMPAESNPYVSPSP----APRNTMDSVKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVADAAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKLAFSSDNPLSYKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWFMG 239          
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEM_ARATH (GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.867e-65
Identity = 127/207 (61.35%), Postives = 156/207 (75.36%), Query Frame = 3
Query:  237 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKGVIPLSQLKAVNPLTSKASQLRIYPGHL-W*HHEFWXMG 848
            +WS    +    P ++ AA++  A SNPY++ SP E S  S K+ +E+VKGVL  WGK+ AEA K+ E LAGN WQHL+T PS ADAA+GRIAQ TKV AEGGYEKIFRQ+F+T PEEQLL ++ACYLSTSAGPV+GVLY+S+AKLA+CSD+PLSYK GD+T+WSYYK VIPL QLKAVNP  S  +    Y   +   +HEFW MG
Sbjct:   71 HWSPELVSGSQEP-DQKAASSSSAGSNPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKLAYCSDNPLSYKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWFMG 276          
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEML3_ARATH (Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.301e-47
Identity = 108/207 (52.17%), Postives = 133/207 (64.25%), Query Frame = 3
Query:  237 NWSNVSTATGPAPINESAATTMPAESNPYVSPSPIEPS--SSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWSYYKGVIPLSQLKAVNPLTSKASQLRIYPGHL-W*HHEFWXMG 848
            +W+    +  PAP  ++ +++  A SNPYV+ +P E S  S K  +ESVKGVL  WG++  EA  +AE LAGN WQH         AA+GRIAQ TKVLAEGGYEKIFRQ+F+TVPEEQL  ++ACYLSTSAGPV+GVLY+STAKLA+CSD  L               VIPL QLK+VNP  S  +    Y   +    HEFW MG
Sbjct:   29 HWNPELVSESPAPDEKALSSSSAARSNPYVARAPTETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR------AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVSTAKLAYCSDTSLV--------------VIPLHQLKSVNPSISTVNPAEKYIQVISVDDHEFWFMG 215          
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEML5_ARATH (GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.304e-39
Identity = 91/245 (37.14%), Postives = 135/245 (55.10%), Query Frame = 3
Query:  162 QQEPHSSDYAPYPKIDPNDVAPPPQNWSNVSTATGPAPI----NESAATTMPAESN-----PYVSPSPIEPSSSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKV-GDETQWSYYKGVIPLSQLKAVNPLTSKAS------QLRIYPGHLW*HHEFWXMG 848
            Q++P + +    P  +P+  +P  + W         AP+    N+ AA  +  ++      PYV  SP+E  ++ N LE V G+   W +KA       E +A N+W +LKTGPS+++ A G++    K + +GG+E +FRQ F T P E L KT+ACYLST+ GPV G +YLS A++AFCSD PL +     +  WSYY+ V+PL+ +  VNP+  K +      QL    G     H+FW MG
Sbjct:   15 QEQPKTLETEHQP--EPSSSSPDQKKWGTHVMGAPAAPVAHPDNQQAAAWVAGDNQQTQYQPYVIYSPVEHPTTNNPLEPVIGMFHTWSRKA-------ETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNETLKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKYIQLTTVDG-----HDFWFMG 245          
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEML2_ARATH (GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.930e-29
Identity = 69/186 (37.10%), Postives = 109/186 (58.60%), Query Frame = 3
Query:  315 NPYVSPSPIEPSSSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDP--LSYKVGDETQWSYYKGVIPLSQLKAVNPLTSKASQLRIYPGHLW*H------HEFWXMG 848
            NPYV  +    +S K   + V  VL+  GKK  +AT++AE L G +  HLK  PS++DAA+ R++Q TK++ EGG E++F++ F  +  E+LL ++ CY+ST++GPV GV+Y+S  ++AFCSD    L    G     +YYK V+   ++ +++  T+      + P   + H       EFW MG
Sbjct:   29 NPYVHITSPTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISDAAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRIAFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNV-----LKPSERYVHMVTRDGFEFWFMG 209          
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEML8_ARATH (Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.551e-16
Identity = 62/178 (34.83%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  288 AATTMPAESNPYVSPSPIE----PSSSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGD---ETQWSYYKGVIPLSQLKAVNPL--TSKASQ 794
            A  T PA   P   P+ I     P+SSK    + KG       K+    K+ +     +    K GP L +    +++   ++L  GG EKI+++ F    EE+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV     E    +YK  IPL ++  VN    T+K SQ
Sbjct:   15 AVKTSPAGYLP--DPASINKLQIPTSSKFSFLTGKG-------KSMLRKKKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSE--RSIKVASPQGELNRVHYKVSIPLCKINGVNQSQNTTKPSQ 181          
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEML6_ARATH (GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.513e-16
Identity = 61/173 (35.26%), Postives = 88/173 (50.87%), Query Frame = 3
Query:  345 PSSSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDE---TQWSYYKGVIPLSQLKAVNPL--TSKASQLRIYPGHLW*HHEFWXMG 848
            P+SSK    + KG      KK    T  A D         K GP L +    +++   K+L  GG EKI+++ F    +E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV          +YK  IPL ++  VN    T K SQ  +    +  + +FW MG
Sbjct:   36 PTSSKVSYLTGKGKSMLRKKKTDSFTNGARDQD-------KLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAYQCYLSTTAGPIAGLLFISSKKIAFCSE--RSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQNTKKPSQKYLEIVTI-DNFDFWFMG 198          
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEML7_ARATH (GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 59/185 (31.89%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  318 PYVSPSPI----EPSSSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPL--SYKVGDETQWSYYKGVIPLSQLKAVNPL--TSKASQLRIYPGHLW*HHEFWXMG 848
            P V+ +P+    +P+S  NKL+     +    K +    K+ +          K GP L +    +++   K+L  GG EKI+++ F    +E+L K Y CYLST+ G + G+L++S+ K+AFCS+  +  +   GD T+  +YK  IPL ++  VN    T K SQ R        +++FW MG
Sbjct:   14 PAVNTAPVGYLPDPASI-NKLQ-----IPTSSKVSMLQKKKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAYQCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTR-VHYKVSIPLCKINGVNQSQNTKKPSQ-RYLEVVTVDNYDFWFMG 190          
BLAST of EY662860 vs. ExPASy Swiss-Prot
Match: GEML4_ARATH (GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.240e-15
Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  303 PAESNPYVSPSPIEPSSSKNKLESVKGVLSNWGKKAAEATKRAEDLAGNMWQHLKTGPSLADAAVGRIAQRTKVLAEGGYEKIFRQSFDTVPEEQLLKTYACYLSTSAGPVVGVLYLSTAKLAFCSDDPLSYKVGDETQWS----YYKGVIPLSQLKAVNPL--TSKASQ 794
            PA  N +  P+    SS K++  +VK +L           K+ +     +    K  P L +    +++   ++L  GG EKIF++ F     E+L K Y CYLST+AGP+ G+L++S+ K+AFCS+   S KV D  Q      +YK  IPL ++  VN    T K SQ
Sbjct:   27 PASFNKFRVPA----SSKKSEQSNVKSILKR---------KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMYQCYLSTTAGPIAGLLFISSKKMAFCSE--RSIKV-DSPQGDIIRVHYKVSIPLCKIDRVNQSQNTKKPSQ 180          
The following BLAST results are available for this feature:
BLAST of EY662860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GEML1_ARATH1.861e-7865.64GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1... [more]
GEM_ARATH6.867e-6561.35GLABRA2 expression modulator OS=Arabidopsis thalia... [more]
GEML3_ARATH1.301e-4752.17Putative GEM-like protein 3 OS=Arabidopsis thalian... [more]
GEML5_ARATH1.304e-3937.14GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g... [more]
GEML2_ARATH7.930e-2937.10GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g... [more]
GEML8_ARATH1.551e-1634.83Putative GEM-like protein 8 OS=Arabidopsis thalian... [more]
GEML6_ARATH4.513e-1635.26GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g... [more]
GEML7_ARATH2.240e-1531.89GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g... [more]
GEML4_ARATH2.240e-1534.12GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-048-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662860 ID=EY662860; Name=EY662860; organism=Citrus sinensis; type=EST; length=899bp
TGCTCGACCCACGCGTCCGATTCAGAATCTCCCAAAATTTCGGTCCGAGT
TCCGTTCGACGGAAAATTTGTACTTAGAAAGAGTAAAAAAGGATGAATCA
GCAACAAGCCGATCATCAAATTGAAACCAAAGCTTCTTCAGAGACCCATC
ATATGCAGCAGCAGCAAGAACCTCACTCATCTGACTACGCTCCTTACCCT
AAGATTGACCCAAACGACGTCGCTCCACCTCCTCAAAATTGGTCGAACGT
GTCCACGGCCACGGGGCCAGCGCCTATCAACGAGAGTGCCGCCACCACCA
TGCCTGCAGAATCCAATCCCTACGTGTCCCCCTCTCCGATTGAGCCATCC
TCCTCAAAGAATAAGCTGGAGTCAGTGAAGGGCGTGTTGTCAAATTGGGG
GAAGAAGGCAGCGGAGGCTACGAAGAGAGCTGAGGATCTCGCCGGCAATA
TGTGGCAGCACTTGAAAACTGGCCCTAGTCTTGCTGATGCTGCCGTGGGA
AGAATTGCACAGAGAACAAAAGTGCTCGCTGAAGGTGGATACGAGAAGAT
CTTTCGACAAAGTTTTGACACTGTTCCTGAGGAACAACTTCTGAAGACTT
ACGCATGCTACCTATCCACATCTGCCGGTCCCGTAGTGGGAGTTTTATAT
TTGTCAACTGCAAAGCTTGCATTTTGTAGTGATGACCCTCTGTCTTACAA
AGTAGGTGATGAGACGCAATGGAGCTATTATAAGGGTGTTATTCCATTGA
GTCAGCTGAAGGCAGTCAATCCCCTCACAAGCAAAGCAAGCCAGCTGAGA
ATATATCCAGGTCATCTCTGGTGACACCATGAGTTTTGGNTCATGGGCTT
GTGCATTATGATAGTGCGGTGAAAATCTTCTGGGAGCATTGGGGCTCGT
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