EY662745

Overview
NameEY662745
Unique NameEY662745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:656..1095. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.750e-24
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 204
            RKW   NVS EVAASTRIIYGGS NGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+A VK+N
Sbjct:  190 RKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.092e-24
Identity = 53/64 (82.81%), Postives = 58/64 (90.62%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 204
            RKWF DNVSAEV+ASTRIIYGGS +G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  131 RKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 8.685e-24
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 198
            RKW   NVSAEVA STRIIYGGS  GANCKELAA+PDVDGFLVGGASLKPEFIDII SATVK
Sbjct:  190 RKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.300e-23
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 204
            RKW ++NV A+VA S RIIYGGS NGAN KELA QPD+DGFLVGGASLKPEF+DIIKSATVK +
Sbjct:  190 RKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 7.352e-23
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 204
            RKW   NVSA+VAA+TRIIYGGS NG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  190 RKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 2.139e-22
Identity = 51/62 (82.26%), Postives = 54/62 (87.10%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 198
            R W + NVS EVA STRIIYGGS  GA+CKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  190 RDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 8.129e-22
Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 198
            R W + N S EVA STRIIYGGS   ANCKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  190 RDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.882e-21
Identity = 49/62 (79.03%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 198
            R W + NVS EVA STRIIYGGS  GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A VK
Sbjct:  190 RDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.932e-19
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            R W + NVS  VA STRIIYGGS  GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  190 RGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 4.932e-19
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            R W + NVS  VA STRIIYGGS  GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  190 RGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of EY662745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
TPIS_PETHY1.750e-2484.38Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_LACSA5.092e-2482.81Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ORYSJ8.685e-2487.10Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_COPJA3.300e-2378.13Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ARATH7.352e-2379.69Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_SECCE2.139e-2282.26Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE8.129e-2280.65Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_HORVU6.882e-2179.03Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_MACMU4.932e-1975.86Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA4.932e-1975.86Triosephosphate isomerase OS=Macaca fascicularis G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-047-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662745 ID=EY662745; Name=EY662745; organism=Citrus sinensis; type=EST; length=439bp
CCACGCGTCCGGAGGAAATGGTTTCAAGACAATGTCAGTGCTGAAGTTGC
AGCATCAACTAGAATCATCTACGGAGGTTCTGCAAATGGAGCAAATTGCA
AAGAATTGGCAGCACAACCTGATGTAGATGGATTTTTGGTTGGTGGAGCT
TCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAGTGAAGAA
GAATTGAAGTTAAGACCAAGCTACTCGGCTTGCTGATGCCTGCAGTTTTC
TCTGTTATGCTTTCTGGAAACTAGCGTTGTAATTTTTGTGGTCTGTTAAG
TGTTACCAACGCCTTTCGAGTATAATAAGTTAAATTTTCAGAATTGTTAA
GAATCTCTTTCCTATTTCAGTGGGGATTTGAAACTTATCATTGTGGATTT
AATAAATGTTTGCTTTTCCCTTCTAAAAAAAAAAAAAAA
back to top