EY662735

Overview
NameEY662735
Unique NameEY662735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4626 contig Csv1_Contig4626:500..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY662735 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.080e-23
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 2 
Query:   62 SQEAQFYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 259
            ++EA+ YA+ENGLFFMETSAKTATNVNDIFYEIAKRLPR QPA NP+GMVL D+P + + +ASCC+
Sbjct:  135 AEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPAQNPAGMVLEDKPAQGSQAASCCT 200
[Close]
BLAST of EY662735 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.300e-22
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 2 
Query:   62 SQEAQFYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 259
            ++EA+ YAQEN LFFMETSAKTATNV DIFYEIAKRLPRVQPA NP+GMVL + PG    S+SCC+
Sbjct:  135 AEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPAENPTGMVLPNGPGATAVSSSCCA 200
[Close]
BLAST of EY662735 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.123e-22
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 2 
Query:   62 SQEAQFYAQENGLFFMETSAKTATNVNDIFYEIAKRLPRVQPAPNPSGMVLMDRPGERTASASCCS 259
            ++EA+ YA+ENGLFFMETSAKTA NVN IFYEIAKRLPR QPA NP+GMVL+DR  E T + SCC+
Sbjct:  135 AEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAGMVLVDRAAEGTRATSCCT 200
The following BLAST results are available for this feature:
BLAST of EY662735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RAB5_TOBAC2.080e-2374.24Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RHA1_ARATH2.300e-2274.24Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RHN1_NICPL5.123e-2272.73Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-047-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662735 ID=EY662735; Name=EY662735; organism=Citrus sinensis; type=EST; length=450bp
CCACGCGTCCGATGAAATTGGTTGCGCTAATATGATGTTTCTTTAACTAA
ATTTGTCATGGTCGCAGGAAGCACAATTTTATGCCCAGGAAAATGGCCTA
TTCTTTATGGAAACCTCTGCAAAAACAGCAACCAATGTGAATGACATTTT
CTATGAAATAGCAAAGAGATTGCCTCGAGTGCAGCCAGCACCAAATCCAT
CAGGAATGGTTCTTATGGATAGACCTGGGGAAAGGACAGCGAGTGCATCA
TGTTGCTCTTAGATACTTGGGTGGTGATGAGCACTGTCTGTTTGTATCTT
CTAAATGGCTCCTCTAGCTTTACTAGGAACTTTTTGAGTCTTATCCTTCC
AAGTTTGCTATCGTGTATTATTTGTTGAGATATCAGAACTGTACATGCAT
CTTGCATTTGTATGAACTGGTAAATTGAATTGGAAAAAAAAAAAAAAAAA
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