EY662712

Overview
NameEY662712
Unique NameEY662712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7778 contig Csv1_Contig7778:1..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WD66_PHYPO (66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.352e-36
Identity = 67/149 (44.97%), Postives = 102/149 (68.46%), Query Frame = 1
Query:   37 DGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 483
            DGSE  +G++D  +H+YS+ G TL+E+AVL  HRG ++ I YSPD   FAS D NR+  VWD+ SR++K++  +YH AR+  LAW+ N++ + TGSLD+ V ++ + +P S  + IK AH GGV  + + DEH+V S+G D  ++ W +
Sbjct:  452 DGSEVAVGAKDNSIHIYSLSGTTLSEQAVLSGHRGFLTAIAYSPDGKHFASADQNRDIFVWDKASRKIKVEGWVYHNARVTSLAWNSNSNNIVTGSLDSHVYVWSVSEP-SKHIAIKNAHRGGVNAVLWVDEHTVASAGLDCSIKTWTI 599          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WD42_DICDI (WD repeat-containing protein 2 homolog OS=Dictyostelium discoideum GN=wdpA PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.959e-28
Identity = 55/148 (37.16%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   43 SEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT 486
            +E  +G +D K+HV+++ G+ LT    L+ HRGA++ + YSP     ASG  NRE IVW    +E K K  + HTARIN +AWS ++  VA+ SLD+ + I+ ++ P +S + +K +HLGGV  + +   + + S+G +  +++W ++
Sbjct:  451 TEVSVGGKDNKIHVFTLSGNNLTASHTLDNHRGAITDLSYSPCGKYLASGCSNREVIVWS--GKEAKSKGWVNHTARINAVAWSNDSKFVASASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNEIFSAGNEGAIKIWNVS 596          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WDR1_DROME (Actin-interacting protein 1 OS=Drosophila melanogaster GN=flr PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.644e-23
Identity = 56/159 (35.22%), Postives = 95/159 (59.75%), Query Frame = 1
Query:   13 ASGFCIPPDGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD-RVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRL 483
            AS   +  D S+  +G  D KLH+Y+++G  L  +  L+ H GAV+ + YSPD+    + D +R+ +++     +    K   +H+AR+N +AWSPN+ +VA+GSLDT +II+ +  PA   + IK AH    +  L + D ++V+S+G+D   +VW +
Sbjct:  449 ASSIAVNADTSDVAVGGDDQKLHIYTLKGGVLEPKVELD-HLGAVTDVSYSPDLKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVAWSPNSLLVASGSLDTTIIIWSVANPAKHTI-IKNAHPQSQITRLVWLDNNTVISTGQDCNTKVWHV 605          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WDR1_HUMAN (WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 2.613e-19
Identity = 57/155 (36.77%), Postives = 88/155 (56.77%), Query Frame = 1
Query:   28 IPPDGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRLT 486
            + P G    IG  DG + +YSI G TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ Y H A+I CLAWSP+N   A+G +D  V ++ +  P  +R+ I+ AH L  V  LA+ DEH++V++  DA V+ W +T
Sbjct:  453 VHPGGDTVAIGGVDGNVRLYSILGTTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFS-VADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTIT 605          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WDR1_RAT (WD repeat-containing protein 1 OS=Rattus norvegicus GN=Wdr1 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 3.412e-19
Identity = 56/155 (36.13%), Postives = 88/155 (56.77%), Query Frame = 1
Query:   28 IPPDGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRLT 486
            + P G    +G  DG + VYSI G TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ Y H A+I CLAWSP+N   A+G +D  V ++ +  P  +++ I+ AH L  V  LA+ DEH++V++  DA V+ W +T
Sbjct:  453 VHPGGDTVAVGGSDGNVRVYSILGATLKDEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFS-VADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETKVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTIT 605          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WDR1_MOUSE (WD repeat-containing protein 1 OS=Mus musculus GN=Wdr1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 55/155 (35.48%), Postives = 87/155 (56.13%), Query Frame = 1
Query:   28 IPPDGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRLT 486
            + P G    +G  DG + VYSI   TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ Y H A+I CLAWSP+N   A+G +D  V ++ +  P  +++ I+ AH L  V  LA+ DEH++V++  DA V+ W +T
Sbjct:  453 VHPGGDTVAVGGTDGNVRVYSILASTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFS-VADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETKVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTIT 605          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WDR1_CAEEL (Actin-interacting protein 1 OS=Caenorhabditis elegans GN=unc-78 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 49/164 (29.88%), Postives = 97/164 (59.15%), Query Frame = 1
Query:    4 STHASGFCIPPDGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL---KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRL 483
            S ++S   +  D     +G QD K+HVY + G +++E   +  H   ++ + +S + +   + D +R+ I +  V+   +L    +  +HTA++ C++WSP+N  +ATGSLD  VI++ ++KP+   + IKGAH +  V  + + +E ++VS+G+D+ ++ W +
Sbjct:  448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATDQSRKVIPYS-VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WDR1_CHICK (WD repeat-containing protein 1 OS=Gallus gallus GN=WDR1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.212e-18
Identity = 51/156 (32.69%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   28 IPPDGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 492
            + P G    +G  DG + +YSI+G +L  +    + +G V+ + YS D +  A  D N+   V+      V+      H A++ C+AWSP+N   A+G +D  V ++ +  P  +R+ I  AH L  V GLA+ DEH++V++  DA V+ W ++ N
Sbjct:  455 VHPGGGSVAVGGTDGNVRLYSIQGTSLKSDDKTLEAKGPVTDLAYSHDGAFLAVCDANKVVTVFSVPDGYVEHNVFYGHHAKVVCIAWSPDNEHFASGGMDMMVYVWTVSDP-ETRIKIPDAHRLHHVSGLAWLDEHTLVTTSHDASVKEWSISYN 609          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: WDR1_BOVIN (WD repeat-containing protein 1 OS=Bos taurus GN=WDR1 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 3.773e-18
Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 1
Query:   28 IPPDGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRL 483
            + P G    +G  DG + +YSI G TL +E  L + +G V+ + +S D +  A  D ++   V+  V+      N+ Y H A+I CLAWSP+N   A+G +D  V ++ +  P  +R+ I+ AH L  V  LA+ DEH++V++  DA V+ W +
Sbjct:  453 VHPGGETVAVGGADGNVRLYSILGTTLKDEGKLLEAKGPVTDLAFSHDGAFLAVCDASKVVTVFS-VADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETRVKIQDAHRLHHVSSLAWLDEHTLVTTSHDASVKEWTI 604          
BLAST of EY662712 vs. ExPASy Swiss-Prot
Match: YE85_SCHPO (Uncharacterized WD repeat-containing protein C9G1.05 OS=Schizosaccharomyces pombe GN=SPAC9G1.05 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.927e-18
Identity = 46/151 (30.46%), Postives = 85/151 (56.29%), Query Frame = 1
Query:   34 PDGSEAIIGSQDGKLHVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT 486
            P  SE  +G +D  ++++++    L E A  +     ++ + YSPD    A GD + + +++D  SREV      +HT RI  ++W+  ++ +AT SLDT + IY +++P    + +K AH  G   + +  E+ ++S+G DA ++VW +T
Sbjct:  445 PLKSEFCVGGEDCCVYIHTLEKGELCEVAQCKDSTAPITCLAYSPDGKYLACGDASGKVVLYDANSREVITSRWAFHTGRILGMSWNAKSTHLATASLDTNIHIYSVERP-MKYIAMKNAHSLGATQVEWVSENELLSTGSDAAIKVWSVT 594          
The following BLAST results are available for this feature:
BLAST of EY662712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
WD66_PHYPO2.352e-3644.9766 kDa stress protein OS=Physarum polycephalum PE=... [more]
WD42_DICDI8.959e-2837.16WD repeat-containing protein 2 homolog OS=Dictyost... [more]
WDR1_DROME6.644e-2335.22Actin-interacting protein 1 OS=Drosophila melanoga... [more]
WDR1_HUMAN2.613e-1936.77WD repeat-containing protein 1 OS=Homo sapiens GN=... [more]
WDR1_RAT3.412e-1936.13WD repeat-containing protein 1 OS=Rattus norvegicu... [more]
WDR1_MOUSE9.928e-1935.48WD repeat-containing protein 1 OS=Mus musculus GN=... [more]
WDR1_CAEEL9.928e-1929.88Actin-interacting protein 1 OS=Caenorhabditis eleg... [more]
WDR1_CHICK2.212e-1832.69WD repeat-containing protein 1 OS=Gallus gallus GN... [more]
WDR1_BOVIN3.773e-1835.06WD repeat-containing protein 1 OS=Bos taurus GN=WD... [more]
YE85_SCHPO4.927e-1830.46Uncharacterized WD repeat-containing protein C9G1.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-047-B12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662712 ID=EY662712; Name=EY662712; organism=Citrus sinensis; type=EST; length=910bp
TCCTCGACCCACGCGTCCGGCTTCTGCATTCCGCCTGATGGAAGTGAGGC
CATTATAGGTAGTCAAGATGGTAAACTACATGTTTATTCCATCAGAGGGG
ATACTCTTACAGAAGAAGCTGTCCTGGAGAAACACCGAGGGGCAGTTAGT
GTCATACGCTACTCTCCTGATGTTTCAATGTTTGCATCGGGTGATGTAAA
TCGAGAAGCCATAGTGTGGGATCGTGTCTCCCGAGAGGTAAAGCTTAAGA
ACATGCTGTACCACACTGCCCGCATTAACTGTCTTGCTTGGTCTCCTAAT
AACAGTATGGTTGCTACTGGATCACTTGATACCTGTGTTATTATATATGA
AATTGACAAGCCAGCATCTAGCCGCATGACCATAAAAGGAGCCCACTTGG
GTGGGGTTTATGGATTAGCTTTCACTGATGAGCACTCTGTGGTTAGCTCT
GGTGAGGATGCTTGTGTCCGTGTGTGGAGGTTGACCCCTAATTGAGATTG
ACCGCCGGAGATACCAAGGTCAAGATCTAGAAGTTGGTGAACATATGTCG
ACTTCATTGGGTTTTGTTTATTTGAATTTGGTTTGCAATGAGATGGAACA
AAAAGGAAACTTCTGCGACCATGATTTCTCTACTGTCGTGAAGATCATAC
TAGCACTTTACACCTATTTACTTTGCAGTGCAAATGACCCTTTGAAAGTA
ACGGCTCAATTGATGAGCAAGTCTTTTGGCCTCTTTGCAGCTTGGAGTTT
GTGTCTATTTCTTGTTGATATTGGCGAAAGCATGCATTTCCATGATGTTT
GAGCATAGCTGTTGTGGGTCCTCTATTCTGGGGGCAATTTAAACATACCA
TTTTGTTGTGTGAAGGTTTTGCCTGATGGTTTTGTCTTTTAAGCCTGCCC
AACTTGAAAA
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