EY662322

Overview
NameEY662322
Unique NameEY662322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7461 contig Csv1_Contig7461:1..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662322 vs. ExPASy Swiss-Prot
Match: BRE1B_ARATH (E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabidopsis thaliana GN=HUB2 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 4.781e-68
Identity = 82/178 (46.07%), Postives = 119/178 (66.85%), Query Frame = 1
Query:    4 GLPAGGGSNVLQKLDSENQT*DSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHXXXXXXXXXXXXXXSRRKLVSLKMQK 537
            G+ AG     L  LD  ++    +P    ++ FLCRLLQV+S+++S  D +++ VEEALA RHSS  ELM   E  ID Q+ K +SI+++ H   S EDA IQLS I+D+MKEE+KNL E+++ +H++HKE+++QI+ YISSHS DQ+E++H              +RRKL++LKMQK
Sbjct:  122 GVRAGANQEALNYLDIVDKK--RVPPCAADETFLCRLLQVDSLDTSKSDEVVRKVEEALALRHSSTMELMGLFENTIDTQKTKAESISQSLHAVKSTEDATIQLSSINDLMKEESKNLREMIDALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLEEIKAELEENRRKLITLKMQK 297          

HSP 2 Score: 118.242 bits (295), Expect = 4.781e-68
Identity = 59/119 (49.58%), Postives = 89/119 (74.79%), Query Frame = 3
Query:  525 KDAKDIASGTHSLVPAAAMVNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDPLQHWNVEVERYKALTDSLLIDK 881
            K  KD A   H   PA A  NGS+SPEK P D +  L+ELKDS++E KI+A  RLSE++ +Q+ N++LS+Q ++++NEL DD+Y++SSRLY+L+ND + HWN E++RYK LT+++  ++
Sbjct:  294 KMQKDAACEGHVTSPAIA--NGSLSPEK-PVD-KTKLRELKDSIDEIKIMAEGRLSELQASQEYNLSLSRQCQDIENELKDDQYIYSSRLYSLINDRIHHWNAELDRYKILTEAIQAER 408          
BLAST of EY662322 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSJ (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. japonica GN=BRE1B PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.651e-46
Identity = 61/177 (34.46%), Postives = 102/177 (57.63%), Query Frame = 1
Query:    4 GLPAGGGSNVLQKLDSENQT*DSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHXXXXXXXXXXXXXXSRRKLVSLKMQ 534
            G+ AGG  N LQ LD E  + +S+ S P E++FL RLL   +  ++    + + VEEALA R+S+   LMK ++E    Q+ +++S++ A + + S+ED I+ L   +D +KE   NL + + II+ KH++Y D+IE + ++ S +  E++               SRRKL  L++Q
Sbjct:   63 GVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLLNSRNFRNNDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQ 239          

HSP 2 Score: 99.7525 bits (247), Expect = 1.651e-46
Identity = 54/116 (46.55%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  540 IASGTHSLVPAAAM--VNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDPLQHWNVEVERYKALTDSLLIDK 881
            + +G  SL+  +A   VNGSVS +K  +D  M  ++LKD+VEEAK LAA+RL E+ E Q+DN+ LSKQLE++Q++L D+ Y+ +S+ Y +++D L H N E+ERY+ L + L  +K
Sbjct:  238 LQTGGGSLMNTSAPNGVNGSVSTDKS-SDKGMGWRDLKDAVEEAKTLAANRLFELHETQEDNLILSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEIERYRGLVEVLQNEK 352          
BLAST of EY662322 vs. ExPASy Swiss-Prot
Match: BRE1B_ORYSI (E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp. indica GN=BRE1B PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.651e-46
Identity = 61/177 (34.46%), Postives = 102/177 (57.63%), Query Frame = 1
Query:    4 GLPAGGGSNVLQKLDSENQT*DSIPSGPPEDMFLCRLLQVNSIESSSKDGILQYVEEALASRHSSARELMKFIEEVIDAQRVKTKSIAEAFHEKLSAEDAIIQLSKIDDMMKEEAKNLHEVMEIIHLKHKEYADQIENYISSHSVDQAEIQHXXXXXXXXXXXXXXSRRKLVSLKMQ 534
            G+ AGG  N LQ LD E  + +S+ S P E++FL RLL   +  ++    + + VEEALA R+S+   LMK ++E    Q+ +++S++ A + + S+ED I+ L   +D +KE   NL + + II+ KH++Y D+IE + ++ S +  E++               SRRKL  L++Q
Sbjct:   63 GVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLLNSRNFRNNDDSSLSKLVEEALALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQ 239          

HSP 2 Score: 99.7525 bits (247), Expect = 1.651e-46
Identity = 54/116 (46.55%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  540 IASGTHSLVPAAAM--VNGSVSPEKRPADGRMDLQELKDSVEEAKILAADRLSEVEEAQQDNINLSKQLENLQNELNDDKYVHSSRLYNLVNDPLQHWNVEVERYKALTDSLLIDK 881
            + +G  SL+  +A   VNGSVS +K  +D  M  ++LKD+VEEAK LAA+RL E+ E Q+DN+ LSKQLE++Q++L D+ Y+ +S+ Y +++D L H N E+ERY+ L + L  +K
Sbjct:  238 LQTGGGSLMNTSAPNGVNGSVSTDKS-SDKGMGWRDLKDAVEEAKTLAANRLFELHETQEDNLILSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEIERYRGLVEVLQNEK 352          
The following BLAST results are available for this feature:
BLAST of EY662322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BRE1B_ARATH4.781e-6846.07E3 ubiquitin-protein ligase BRE1-like 2 OS=Arabido... [more]
BRE1B_ORYSJ1.651e-4634.46E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
BRE1B_ORYSI1.651e-4634.46E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-H06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662322 ID=EY662322; Name=EY662322; organism=Citrus sinensis; type=EST; length=881bp
GGTGGATTACCGGCTGGGGGAGGATCAAATGTTTTACAAAAGTTGGATTC
TGAAAACCAGACTTGAGATTCAATTCCATCTGGTCCTCCAGAGGATATGT
TTCTCTGTAGACTACTTCAAGTGAATTCCATTGAGAGCAGTAGCAAAGAT
GGAATACTCCAATATGTTGAAGAGGCCCTTGCCTCACGTCACTCATCTGC
TAGGGAGTTGATGAAATTTATTGAAGAAGTCATTGATGCTCAGAGAGTGA
AAACTAAGAGCATAGCTGAGGCTTTCCATGAAAAGCTATCTGCAGAAGAT
GCCATTATCCAGCTGTCTAAGATTGATGATATGATGAAAGAAGAGGCTAA
AAATCTGCATGAGGTGATGGAGATTATCCACTTGAAGCATAAGGAATATG
CTGATCAAATTGAGAATTACATAAGCAGTCATTCGGTTGATCAAGCTGAG
ATTCAACACCTTGCAGGTGAACTTGAAGAGACCATGGCTGAACTTGAGGA
AAGTAGAAGAAAACTGGTCAGTCTAAAGATGCAAAAGATATAGCATCCGG
TACGCATTCACTGGTTCCAGCTGCTGCTATGGTAAATGGAAGTGTATCGC
CAGAGAAGAGGCCTGCTGATGGGAGGATGGATTTGCAAGAATTGAAGGAT
TCTGTCGAGGAAGCAAAGATACTGGCAGCAGACCGTCTTTCCGAGGTTGA
AGAAGCACAGCAAGACAATATAAACTTGTCAAAACAATTAGAGAATCTTC
AGAATGAGCTGAATGACGACAAATATGTACACTCATCTCGATTGTATAAT
TTAGTAAATGATCCACTCCAGCATTGGAATGTTGAAGTAGAACGATACAA
AGCATTGACAGATTCTTTGCTGATTGACAAG
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