EY662318

Overview
NameEY662318
Unique NameEY662318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: PDR1_TOBAC (Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.123e-23
Identity = 55/116 (47.41%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   17 VRTKPSIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            V    ++A+IV+  FYG+WN+FSGF             YYWANP+AWTLYGLVASQFGD+  K  D  ETV+QFL+ YF FKHD                       IK FNFQRR
Sbjct: 1320 VTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQTKLSD-NETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: PDR1_NICPL (Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.582e-21
Identity = 51/116 (43.97%), Postives = 61/116 (52.59%), Query Frame = 2
Query:   17 VRTKPSIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            V    ++A+IV+  FY +WN+FSGF             YYW  PIAWTLYGLVASQFGD+ D   D  +TV+QFL+  F FKHD                       IK FNFQRR
Sbjct: 1321 VTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.501e-20
Identity = 47/110 (42.73%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   35 IAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            IAAIVST FY +WN+F+GF             Y WA P+AWTLYGLVASQ+GD+ +  ++ GE V+ +++ YF F+HD                       IK+FNFQRR
Sbjct: 1335 IAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 47/110 (42.73%), Postives = 56/110 (50.91%), Query Frame = 2
Query:   35 IAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            IAAIV+  FY +WN+F+GF             YYWA P+AWTLYGLV SQFG+  D   D  ETVK FL+ +  F+HD                       IK  NFQRR
Sbjct: 1332 IAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.372e-18
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 2
Query:   35 IAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            IA++VS+ FYG+WN+FSGF             YYW  P+AWTLYGL+ASQFGD+ +   D+  +VKQF+++++ ++                         IK FNFQ+R
Sbjct: 1314 IASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 47/110 (42.73%), Postives = 58/110 (52.73%), Query Frame = 2
Query:   35 IAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            +A+IVS+ FYG+WN+FSGF             Y W  P+AWTLYGLVASQFGD+    MD G  VK F+++YFDFKH                        I   NFQ+R
Sbjct: 1356 VASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI-MTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.380e-17
Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 2
Query:   35 IAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            IA+IVS+ FY +WN+FSGF             Y WA P+AWTLYGLV SQFGD+ +  M+ G  VK F+++YF FKH                        I  FNFQ+R
Sbjct: 1349 IASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.380e-17
Identity = 46/110 (41.82%), Postives = 58/110 (52.73%), Query Frame = 2
Query:   35 IAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            IA+IVS+ FY +WN+FSGF             Y WA P+AWTLYGLV SQFGD+ +  M+ G  VK F+++YF FKH                        I  FNFQ+R
Sbjct: 1349 IASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDI-ETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 46/111 (41.44%), Postives = 55/111 (49.55%), Query Frame = 2
Query:   32 SIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKMDTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            SIAAI+S+ FY +WN+FSG+             Y W  P+AWTLYGLVASQFGD+         TV QF+ DYF F H+                       I  FNFQRR
Sbjct: 1340 SIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450          
BLAST of EY662318 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 44/115 (38.26%), Postives = 57/115 (49.57%), Query Frame = 2
Query:   32 SIAAIVSTLFYGLWNVFSGFXXXXXXXXXXXXXYYWANPIAWTLYGLVASQFGDMDDKKM----DTGETVKQFLKDYFDFKHDXXXXXXXXXXXXXXXXXXXXXXXIKMFNFQRR 364
            ++A I++  FY LWN+F GF             YYWANP++WTLYGL+ SQFGD+D   +     T  T   FL+D+F F+HD                       IK  NFQRR
Sbjct: 1336 TVAPIIAAPFYTLWNLFCGFMIPRKRIPAWWRWYYWANPVSWTLYGLLTSQFGDLDQPLLLADGITTTTAVDFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1450          
The following BLAST results are available for this feature:
BLAST of EY662318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PDR1_TOBAC4.123e-2347.41Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR1_NICPL6.582e-2143.97Pleiotropic drug resistance protein 1 OS=Nicotiana... [more]
PDR7_ORYSJ2.501e-2042.73Putative pleiotropic drug resistance protein 7 OS=... [more]
TUR2_SPIPO2.117e-1942.73Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
AB40G_ARATH1.372e-1838.18ABC transporter G family member 40 OS=Arabidopsis ... [more]
PDR2_ORYSJ1.517e-1742.73Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR3_ORYSJ3.380e-1741.82Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI3.380e-1741.82Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR4_ORYSJ4.415e-1741.44Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR6_ORYSJ9.836e-1738.26Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-H02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662318 ID=EY662318; Name=EY662318; organism=Citrus sinensis; type=EST; length=595bp
TTTCGTCGACCCACGCGTCCGCACCAAACCTTCCATCGCTGCCATTGTTT
CAACTTTATTTTATGGATTGTGGAACGTCTTTTCTGGGTTTATTATCCCA
AGACCTAGGATTCCAATATGGTGGAGATGGTACTATTGGGCCAACCCCAT
AGCTTGGACCTTGTATGGACTGGTTGCTTCGCAGTTCGGAGATATGGACG
ACAAGAAAATGGATACTGGTGAAACGGTGAAACAGTTTCTTAAGGACTAT
TTTGATTTCAAACATGATTTTCTGGGAGTAGTTGCAGCCGTTCTCGTTGT
CTTTGCAGCATTATTTGGATTTCTCTTCGCCCTAGGAATTAAGATGTTTA
ACTTCCAGAGGCGATAGTAATTCTGATAGGTACTGCTGCTGAACATGCGA
TTCAGAAGAAAAATCGCATCGCGGATGCTTTGGCTATGCTATAATCTTTT
CATGCAATGTCCCGTCAGTGTATTGTTTATTTTGATTTAGCATTTTCATT
GCTGGCATTGCAAGATATATTTTGTATACAAGATATGTTTTCTATCTTTT
TAGATTAATAAATTTTCCCTCGCCAGTCAAAAAAAAAAAAAAAAA
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