EY662317

Overview
NameEY662317
Unique NameEY662317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length956
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY662317_ssr167 microsatellite EY662317_ssr167:167..180. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY662317 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 4.134e-33
Identity = 63/96 (65.62%), Postives = 69/96 (71.88%), Query Frame = 3 
Query:  270 MDGGGGYNPRTVEEVFGDFKGRRAGMIKALTTEVEEFYHQCDPEKENLCLYGFPSEQWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWVPLVAV 557
            M+ GG YNPRTVEEVF DFKGRRAGMIKALTT+V+EF+  CDPEKENLCLYG P+E W                  GINFARDGM EKDW+ LVAV
Sbjct:    1 MEAGGAYNPRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAV 96

HSP 2 Score: 30.0314 bits (66), Expect = 4.134e-33
Identity = 21/71 (29.58%), Postives = 32/71 (45.07%), Query Frame = 2 
Query:  560 SDGWILCRXXXXXXXXXXXKSEMKRLWSRIAELPTIFR--GGDRDRQ*KGNREVCGCESVGPASRTSKPKG 766
            SD W+L             K++ KRL++ + +LPTIF    G   +Q K    V    S    S++S  +G
Sbjct:   98 SDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSS--NRSKSSSKRG 166
The following BLAST results are available for this feature:
BLAST of EY662317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH4.134e-3365.63PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-G12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662317 ID=EY662317; Name=EY662317; organism=Citrus sinensis; type=EST; length=956bp
GGGGCCGGAAAGGGAGAGAAGGCGGCGCGCCCAACCNNNNNNNNCCGNNG
GNNNNNCCATTGGTCACTCGCATAANACGGNCCGGAATTCTTTCAAAAAA
GGGNGCGTCCGCTTTTTGCTTTCCAGAGGAAAAACTATTTTCACATCTTT
CCCTCCTTTACTCTTACTCTCTCTCTCTCTCCCCAATTTCGAACTTCGAT
CTCTCTTCTCTGTAAATCTGAAAACAAACGACGAAAAAGAAAAAGAGTGC
GAGAGAATTTGATTCGGTGATGGACGGAGGTGGAGGCTACAATCCGCGTA
CGGTTGAAGAAGTTTTTGGGGATTTCAAGGGCCGAAGAGCTGGCATGATT
AAAGCCCTTACTACTGAGGTTGAAGAGTTTTACCACCAGTGTGACCCTGA
GAAGGAAAATCTTTGCCTCTACGGTTTTCCAAGCGAGCAGTGGGAGGTAA
ACTTACCTGCTGAAGAAGTGCCTCCAGAGCTTCCAGAGCCTGCATTGGGT
ATCAACTTTGCCAGAGATGGGATGCAAGAAAAGGACTGGGTGCCTTTGGT
TGCTGTCCAAGTGATGGTTGGATACTCTGCCGGGGCTTTGACTTTGGTGG
TATGTTTGGTTTTGATAAATCTGAGATGAAACGCCTTTGGAGTAGGATAG
CTGAACTTCCAACAATATTTCGAGGTGGGGACAGGGACAGACAGTGAAAA
GGGAACAGAGAAGTGTGCGGGTGTGAAAGCGTGGGACCAGCGAGTCGTAC
ATCAAAGCCGAAAGGAGGCGCTGAAGACTGGAGTGATGGGTGTGAAGGCT
GTGGAGGGTGAGGGGAGAAAGACTATGAATGGGCTGGAGGAAGAAGAGGA
GGAGGGAGCATTGGGACAAAATTGTTGAGGGGATGGGGGTGAGAATCTAG
CGCGGGCGGGGAGGTTGGAAGGTGTGCTGAGGCGCGGTGAAAAAAGGTGG
CGTGGC
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