EY662314

Overview
NameEY662314
Unique NameEY662314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length783
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY662314 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.836e-28
Identity = 67/134 (50.00%), Postives = 87/134 (64.93%), Query Frame = 3 
Query:   51 LTFVSTPASPDG-WVAWAFTPTAKGMAGSQALIALKSSGSL--VVKTYNISSYSTLTESKLSFQTWDLKAESGANGTTVIYGKLKVPEKAETLNQVWQVGAQVANGHPMKHEFKPANLQAKGPLNLVK--KPGS 437
            + FV+TP+  +G WVAWA  PT   MAGSQA +A +S G    VVKTYNISSYS+L E KL+F  W+L+AES + G   I+  +KVP  A+++NQVWQ+G  V NG P  H F P NL +   L+  +   PGS
Sbjct:   66 VAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSFTEDAAPGS 199
The following BLAST results are available for this feature:
BLAST of EY662314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH1.836e-2850.00Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662314 ID=EY662314; Name=EY662314; organism=Citrus sinensis; type=EST; length=783bp
GAGGTACCGGTCCGGAATCCTCCAAAAAAGGACGCGTCCGCGTCTNCTTA
CTCACATTCGTGTCGACTCCGGCGTCGCCCGACGGCTGGGTCGCGTGGGC
TTTTACCCCGACAGCTAAGGGCATGGCCGGGTCCCAGGCCCTCATCGCCC
TCAAATCCAGCGGCTCCCTCGTCGTCAAGACTTACAACATCAGCTCCTAC
TCCACCCTCACCGAATCAAAGCTCTCGTTCCAAACCTGGGACTTGAAGGC
CGAATCCGGTGCCAACGGGACCACCGTCATTTACGGTAAGCTCAAGGTTC
CGGAGAAAGCGGAGACGTTGAACCAAGTGTGGCAGGTGGGTGCTCAGGTG
GCCAATGGACATCCCATGAAACATGAGTTTAAGCCGGCGAATCTTCAAGC
CAAGGGGCCATTGAATTTGGTCAAGAAGCCCGGTAGTTTGACGCCGGCGT
CGGCGCCGACTCCCGGTACCCCCGGTAGCCCCGGCGTTCCTTCTCCCGAC
AGGGGCGGACAGTCGATGATCAGAGCTAATGTTGTTGGATTGTTTATGGG
TTTGGTTCTGTTTCTTGTAACAGTTTCCGCTTTGTAAACTTTCTGAGTTT
TTTGTTTTTTAATTTTTTTTTAATTTGTAGTATTTTGCCTGTAGTTATTA
TCCGCATTTTGTCCATTGGAGATCTCTGTGTTTTATTTTTTCCGCGAATA
ATTAATATATTTATGTCTTACATTTTGTGCTTTTGGGTTTTAATTTAAAA
ATGGGAATTATAATAAAAAAAAAAACAAAAAAA
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