EY662306

Overview
NameEY662306
Unique NameEY662306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY662306 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 5.174e-23
Identity = 85/214 (39.72%), Postives = 107/214 (50.00%), Query Frame = 1
Query:  154 MACRLADSMFLFMGPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSENSADCR*PIAESYGFRQIGEPLPGNVTMMDVIDSLPKMHLRLMM*KHGSLFYYPSAPLPWG-FP*SQSPMVFASLALAWTGIG-----------AHGSLF*AMIVPQILFEKSYLKTLWEPWPFPLVYPLEPCGF 741
            MA R+ADS+F F GP Q      K+   S   SPG+  +K   LL+KG  H+  RC  P  R    I+AVA PVAPPS +SA+ R  +AESYGFRQIGE LP NVT+ D++D+LPK    +   K              G F  ++SP     LA AWTG             AH S     +V  I+   ++L         PLVYP EP  F
Sbjct:    1 MASRIADSLFAFTGPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFL---------PLVYPYEPWRF 205          
BLAST of EY662306 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.840e-20
Identity = 71/208 (34.13%), Postives = 96/208 (46.15%), Query Frame = 1
Query:  154 MACRLADSMFLFMGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSENSADCR*PIAESYGFRQIGEPLPGNVTMMDVIDSLPKMHLRLMM*KHGSLFYYPSAPLPWG-FP*SQSPMVFASLALAWTGIG-----------AHGSLF*AMIVPQILFEKSYLKTLWEPWPFPLVYPLEPCGF 741
            MAC LADS+ LF G +Q+P   + I    SPG+  L    L+ K  + +R  +       I AVA+PV P    SA+ R  +AE YGFRQ+GEPL  +VT+ DVI+ LPK    +   K              G F  S++P     LA  WTG             AH S     +V  I+   +++         PL+YP EP  F
Sbjct:    1 MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFM---------PLIYPYEPWRF 199          

HSP 2 Score: 86.2705 bits (212), Expect = 2.750e-16
Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 3
Query:  477 PKNAFEIDDVKAWKSVLLSVSSFALGVPLIPK-PHGICFSCFGMDRDWGPWFFVLGHDCAPNPFRE-KLLENLVGTLAFPPCL-PFGTLRV*LPTPLCKQNFGRRK-GWHPVWKKNW-TNPFFEKKI 842
            PK  FEIDDVKAWKSVL+SV+S+ALG+ +I K P  +    +         FFV+GHDCA   F   KL+E++VGTLAF P + P+   R        K N  R    WHPVWK  + + P   K I
Sbjct:  109 PKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPVWKDEFESTPLLRKAI 235          
BLAST of EY662306 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.139e-20
Identity = 74/209 (35.41%), Postives = 102/209 (48.80%), Query Frame = 1
Query:  154 MACRLADSMFLFMGPHQ-RPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSENSADCR*PIAESYGFRQIGEPLPGNVTMMDVIDSLPKMHLRLMM*KHGSLFYYPSAPLPWG-FP*SQSPMVFASLALAWTGIG-----------AHGSLF*AMIVPQILFEKSYLKTLWEPWPFPLVYPLEPCGF 741
            MA R+ADS+F F GP Q  P   +      SPG+  ++   LL+KG +        +    I+AV VPVAPPS ++A+ R  +AESYGF+QIG+ LP NVT+ D++D+LPK    +   K              G F  +++P     LA AWTG             AH S     +V  I+   ++L         PLVYP EP  F
Sbjct:    1 MASRIADSLFAFTGPQQCLPRAPKLASARLSPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFL---------PLVYPYEPWRF 200          
BLAST of EY662306 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.328e-15
Identity = 63/189 (33.33%), Postives = 95/189 (50.26%), Query Frame = 1
Query:  238 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVA-----PPSENSADCR*PIAESYGFRQIGEPLPGNVTMMDVIDSLPKMHLRLMM*K-HGSLFYYPSAPLPWGFP*SQSPMVFASLALAWTGIG-----------AHGSLF*AMIVPQILFEKSYLKTLWEPWPFPLVYPLEPCGF 741
            +S G+  +KW+   ++ + H R +   +GTR     +QAVAVPVA     PP++N+   +  +AE YGF+QIGEPLP +VTM D+I SLPK    +   K  G++    ++     F  +++P     LA AWTG             AH S     +V  I+   +++         PL+YP EP  F
Sbjct:   27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLK-QLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFM---------PLIYPYEPWRF 205          
The following BLAST results are available for this feature:
BLAST of EY662306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FAD6C_ARATH5.174e-2339.72Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_SOYBN1.840e-2034.13Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_BRANA3.139e-2035.41Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]
FAD6C_SPIOL2.328e-1533.33Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662306 ID=EY662306; Name=EY662306; organism=Citrus sinensis; type=EST; length=926bp
CTGTTAAACCGGACCGGAATTCCTTGCACACCAAGGCGTCCGAGAAATTN
CCTGGCCACAATATTTTCACATTCACTCAATCCCAATATATATCCAAGTG
GGAAGGGTGTTCTTCCGAATTGGAATTTCTGCATTTCTCTTGCTCAAAAC
ATAATGGCTTGCAGACTTGCAGATTCTATGTTCCTTTTCATGGGCCCCCA
TCAAAGGCCAACTGGGAGTCAGAAAATTGGATGCTTTAGTTCACCTGGCC
TTTGTCAGCTGAAGTGGGAGAGTCTTCTTGTGAAGGGAGTTAAGCACAAA
AGATGTTCAATTCCCTCTCGAGGGACTAGATTTATACAGGCTGTGGCCGT
TCCAGTTGCACCACCTTCAGAAAACAGTGCGGATTGTAGATAGCCGATAG
CAGAAAGTTATGGGTTTAGGCAAATCGGAGAGCCACTGCCTGGAAATGTG
ACCATGATGGATGTCATTGATTCTCTCCCAAAAATGCATTTGAGATTGAT
GATGTGAAAGCATGGAAGTCTGTTTTATTATCCGTCAGCTCCTTTGCCTT
GGGGGTTCCCCTGATCCCAAAGCCCCATGGTATTTGCTTCTCTTGCTTTG
GCATGGACAGGGATTGGGGCCCATGGTTCTTTGTTTTAGGCCATGATTGT
GCCCCAAATCCTTTTCGAGAAAAGTTACTTGAAAACCTTGTGGGAACCCT
GGCCTTTCCCCCTTGTTTACCCTTTGGAACCCTGCGGGTTTAACTCCCAA
CCCCTCTTTGCAAACAAAATTTCGGACGGAGAAAAGGTTGGCACCCTGTT
TGGAAAAAGAATTGGACAAATCCCTTTTTCGAAAAGAAAATCTAGTGTAA
GAACAATTTCCCTCGTGAGCCTAAACTTAGGGTTATTCCGGCTTTAGTTT
CAGAATCTCGGCCCAATTATGATTAG
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