EY662304

Overview
NameEY662304
Unique NameEY662304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY662304 vs. ExPASy Swiss-Prot
Match: C3H44_ARATH (Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis thaliana GN=At3g51120 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.029e-12
Identity = 65/179 (36.31%), Postives = 85/179 (47.49%), Query Frame = 2 
Query:   62 SNAASWQAMVVPEPDEFSTLGDESVSDLLAEVEAMESLNRFASPTSDMRCGME---FSPENDCFSPIGGLSPTPDAGKSDAXXXXXXXXXXXXXTVTDEPIGVSQAEVLDPHKRSDGRSSMSAEVEDDTKPSDDSINQCEVGSKIQPALPPVT-SWDITAMDTSWSLGSETASISQGAV 586
            + A+ W A +V +PDE     DESVSDLLAEVEAME     +SPTS   C  +     PE D F+P+  +S TP+  + D                      VSQ  +LD    S G+SSM  E +D+T  S       E+     P  PP   S D+T   T+  LGSET ++  G V
Sbjct:  967 AQASGWPA-IVADPDEC----DESVSDLLAEVEAMEQNGLPSSPTSTFHCDDDDDLKGPEKDFFNPVARMSLTPETCRLD----------------------VSQTSILD--NVSAGKSSMLTEAKDNTPFSHCGTAGPELLLFAPPPPPPTAISHDLTLTTTALRLGSET-TVEAGTV 1115
The following BLAST results are available for this feature:
BLAST of EY662304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C3H44_ARATH1.029e-1236.31Zinc finger CCCH domain-containing protein 44 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662304 ID=EY662304; Name=EY662304; organism=Citrus sinensis; type=EST; length=892bp
ACTGGACGCCTGCAGTCCGGTCCGGAATTCTTTCTAAACCGGGCGTCCGC
TTCCACCTGCCTCTAATGCAGCTAGTTGGCAGGCCATGGTTGTCCCTGAA
CCTGATGAGTTCTCCACCCTGGGAGATGAATCAGTTTCAGATCTGCTGGC
TGAAGTTGAAGCAATGGAGTCGCTTAATCGCTTTGCTTCTCCTACTTCAG
ATATGCGTTGTGGTATGGAATTCTCTCCTGAAAATGATTGTTTTAGCCCT
ATAGGGGGTTTGAGCCCAACACCTGATGCAGGAAAAAGTGATGCCTTGAG
CTCCAGTAGTGATTTACAAGTGCATTCTCATTCAACTGTGACAGACGAAC
CAATTGGAGTATCTCAAGCTGAAGTTCTTGATCCTCACAAAAGATCTGAT
GGGCGCTCTTCCATGAGTGCTGAGGTGGAAGACGACACGAAGCCTAGTGA
TGATTCAATAAATCAATGTGAAGTTGGTTCAAAGATCCAACCTGCTTTAC
CACCTGTCACGAGTTGGGACATTACTGCCATGGACACTTCTTGGAGCCTG
GGGTCGGAAACTGCAAGTATTAGCCAGGGAGCTGTGCATGGTAATTCAAA
CTTGGCAATGGGGGGATTCTCCTCACGAGAGGATTGACGACATGGGTTTG
GGAGCTGCTCAGCGGACTGCTCAAGAGCATTTTGACGTGAATTTGGGGAC
ATCCATAGGAAATCCAGACATTTGGGAAAGCCATCCCTAAGTATGTTGGG
GACAGATCTTCTGGGCCAAGAGACCATGGTTTTCCTGGGCGGAGATTCTA
GTTTTGAGAGGGGCAGCTCGGTATGGAATGGGCAAGCGATATATGATGTT
GAAATGGAGGAGGCTGTGTCAACTGCCCCTGACACAACTGAC
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