EY744220

Overview
NameEY744220
Unique NameEY744220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9111 contig Csv1_Contig9111:811..1755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_DICDI (WD repeat-containing protein 48 homolog OS=Dictyostelium discoideum GN=DDB_G0277533 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.104e-27
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 1
Query:   64 EPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKPEDDKVNLARETLKGLLAHWLAKRKLRLGSQATVNGDVLSAKDISARSLTHSRVEVDGNAEN 555
            EP   I G  GI+++++LNNRR VLTKD   +V+LW+IT+G  +E +GK  F++K EE  E++SIP WF VD + GSL + L++P CFSA+ Y  +L +    ED  +N+    L  L + W+    L   +  T   + L+  + S  S   S    D N  N
Sbjct:  788 EPKIKIQGRAGIIKNQVLNNRRQVLTKDNDNNVQLWDITKGKEIESFGKVDFDKKLEEFNEVISIPKWFQVDCKTGSLFISLESPLCFSADAYQTNLGLT-PTEDSLINIGESILYSLFSKWIMGYNLIQLNATTNKDNELNHSNDSVNSSLSSNTSGDNNNNN 950          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_BRUMA (WD repeat-containing protein 48 homolog OS=Brugia malayi GN=Bm1_41555 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.662e-22
Identity = 50/127 (39.37%), Postives = 74/127 (58.27%), Query Frame = 1
Query:   49 VPVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKPEDDKVNLARETLKGLLAHW 429
            +P   EP+ TIPG   I QH +LN++RH++TKDT  +V +W++ +G  V D+GK   EE  ++ F+ V +P+WFTVD + G L + LD    FSA + + D        D K+N     L+ L  HW
Sbjct:  351 IPSIHEPDLTIPGAASIRQHVVLNDKRHIVTKDTDDNVAMWDVLKGRKVCDHGKRPMEEVIKDHFKKVFVPSWFTVDLKSGMLQITLDESDFFSAWVSAKDAGFPNIQNDTKINYGGMLLRALFEHW 477          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_XENTR (WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.725e-21
Identity = 53/132 (40.15%), Postives = 80/132 (60.61%), Query Frame = 1
Query:   40 STPV-PVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKP-EDDKVNLARETLKGLLAHW 429
            STP+ P+  +P+  I G   I+Q  ILN++RH+LTKDT  +V  W++ +   VED GK  FEE+ ++ F+MV +P WF+VD + G L++ LD   CF+A + + D   +     D K+NL    L+ LL  W
Sbjct:  343 STPLSPICSQPDQVIKGGASIIQCNILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEEEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEFW 474          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_CHICK (WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.557e-21
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   52 PVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKP-EDDKVNLARETLKGLLAHW 429
            P+  +P+  I G   I+Q  ILN++RH+LTKDT  +V  W++ +   VED GK  FEE+ ++ F+MV +P WF+VD + G L++ LD   CF+A + + D   +     D K+NL    L+ LL +W
Sbjct:  348 PLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEEEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYW 474          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.461e-20
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   52 PVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKP-EDDKVNLARETLKGLLAHW 429
            P+  +P+  I G   I+Q  ILN++RH+LTKDT  +V  W++ +   VED GK  FE++ ++ F+MV +P WF+VD + G L++ LD   CF+A + + D   +     D K+NL    L+ LL +W
Sbjct:  348 PLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYW 474          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_MOUSE (WD repeat-containing protein 48 OS=Mus musculus GN=Wdr48 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.461e-20
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   52 PVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKP-EDDKVNLARETLKGLLAHW 429
            P+  +P+  I G   I+Q  ILN++RH+LTKDT  +V  W++ +   VED GK  FE++ ++ F+MV +P WF+VD + G L++ LD   CF+A + + D   +     D K+NL    L+ LL +W
Sbjct:  348 PLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYW 474          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.461e-20
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   52 PVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKP-EDDKVNLARETLKGLLAHW 429
            P+  +P+  I G   I+Q  ILN++RH+LTKDT  +V  W++ +   VED GK  FE++ ++ F+MV +P WF+VD + G L++ LD   CF+A + + D   +     D K+NL    L+ LL +W
Sbjct:  348 PLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYW 474          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.492e-20
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   52 PVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKP-EDDKVNLARETLKGLLAHW 429
            P+  +P+  I G   I+Q  ILN++RH+LTKDT  +V  W++ +   VED GK  FE++ ++ F+MV +P WF+VD + G L++ LD   CF+A + + D   +     D K+NL    L+ LL +W
Sbjct:  348 PLCTQPDQVIKGGASIIQCHILNDKRHLLTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYW 474          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.249e-20
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   52 PVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKP-EDDKVNLARETLKGLLAHW 429
            P+  +P   I G   IVQ  ILN++RH+LTKDT  SV  W++ +    ED GK  F+E+ ++ F+MV +P WF+VD + G L++ LD   CF+A + + D         D K+NL    L+ LL  W
Sbjct:  348 PLCTQPEQVIKGGTSIVQCHILNDKRHILTKDTNNSVAFWDVLKACKGEDLGKVDFDEEVKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVAAKDAGFTSPDGSDPKLNLGGLLLQALLEFW 474          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_CAEEL (WD repeat-containing protein 48 homolog OS=Caenorhabditis elegans GN=F35G12.4 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.157e-17
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 1
Query:   67 PNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKPEDDKVNLARETLKGLLAHW 429
            P   IPG P I +H +L+++RHVLT+D+ G+V L+++     ++DYGK  FEE  +E    V IP+WF VD++ G L + LD     S+ + S D        + K+N     L+ L   W
Sbjct:  384 PELVIPGAPAIKKHAMLSDKRHVLTRDSDGNVALYDVLAARKIKDYGKRIFEEVVDENSRQVYIPSWFVVDSKSGMLQITLDELDALSSWLSSKDAGFDDNDRETKLNYGGMMLRSLFERW 504          
The following BLAST results are available for this feature:
BLAST of EY744220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
WDR48_DICDI2.104e-2738.41WD repeat-containing protein 48 homolog OS=Dictyos... [more]
WDR48_BRUMA2.662e-2239.37WD repeat-containing protein 48 homolog OS=Brugia ... [more]
WDR48_XENTR1.725e-2140.15WD repeat-containing protein 48 OS=Xenopus tropica... [more]
WDR48_CHICK6.557e-2139.37WD repeat-containing protein 48 OS=Gallus gallus G... [more]
WDR48_PONAB1.461e-2038.58WD repeat-containing protein 48 OS=Pongo abelii GN... [more]
WDR48_MOUSE1.461e-2038.58WD repeat-containing protein 48 OS=Mus musculus GN... [more]
WDR48_HUMAN1.461e-2038.58WD repeat-containing protein 48 OS=Homo sapiens GN... [more]
WDR48_BOVIN2.492e-2038.58WD repeat-containing protein 48 OS=Bos taurus GN=W... [more]
WDR48_DANRE7.249e-2039.37WD repeat-containing protein 48 OS=Danio rerio GN=... [more]
WDR48_CAEEL1.157e-1736.36WD repeat-containing protein 48 homolog OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744220 ID=EY744220; Name=EY744220; organism=Citrus sinensis; type=EST; length=945bp
CCCACGCGTCCGCCCACGCGTCCGGTTTCGTTGGAAGGATCTACGCCAGT
TCCCGTTTTCAAAGAACCAAACTTTACCATTCCTGGAATTCCGGGAATTG
TGCAGCATGAAATCTTAAATAATAGAAGGCATGTTTTGACTAAGGACACT
GCTGGTTCAGTGAAGCTATGGGAGATCACGCGAGGTGTTGTGGTTGAGGA
CTATGGAAAGGCTTCATTTGAGGAGAAAAAAGAAGAACTATTTGAGATGG
TAAGTATTCCTGCGTGGTTCACGGTGGACACTAGACTTGGAAGCTTGTCT
GTTCATTTGGACACACCACAATGCTTCTCCGCTGAGATGTATTCAGCGGA
CCTTCAAATTGCTGGAAAGCCTGAGGACGATAAGGTTAACTTAGCTCGTG
AAACCCTCAAAGGTCTACTGGCTCATTGGTTAGCTAAGAGAAAGCTGAGA
CTTGGATCACAAGCTACTGTCAATGGGGATGTTTTATCAGCAAAGGATAT
CAGTGCTAGAAGTCTTACCCATTCAAGAGTTGAAGTAGATGGTAATGCTG
AAAATGACTCAGTGGTGTATCCTCCATTTGAATTCTCAACAATTTCGCCA
CCATCCATAATTACGGAAGGGTTCTCAAGGAAGCCCATGGAAAAAGAAAA
ATTACAAACTTGGATGGGAACTGAAAATGACAAGGACTTTTTCCTTGGTG
GGGTCTTGACTGTGTCTTGAAAAACCTCCTACCACCCAAAAAAAACACAA
ATGCAGCTTTTACCCTGCTTCCCTGGAAAGGGTTCGCTGGCCAAATCCGG
AACCAGGGGAAAAATAAATGGCCCCCCCGAAAATTGAAAAAAACACAAGG
GTTTTTAAATTTTTTTATAAAAAAAAAAAGGTTTTTTGAAAAAACCCCCC
CCGGAAAAGAGGGAAAAACCCCGGGGGGGAAAAAATTTCCCCCCC
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