EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY744219_ssr47 microsatellite EY744219_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_AQUAE (50S ribosomal protein L13 OS=Aquifex aeolicus GN=rplM PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.428e-28
Identity = 62/124 (50.00%), Postives = 79/124 (63.71%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA G+ LGRLAS++A +++GK KP Y P+ D GD  IV+NA+ I VTG+KL+ K YYWH+ Y G LKERTLK  +E  P E IR AV RMLP+N           ++ G EHP     P
Sbjct:   14 KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKKYYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHPHQAQKP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THESQ (50S ribosomal protein L13 OS=Thermotoga sp. (strain RQ2) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N           ++   EHP     P
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKP 144          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THEP1 (50S ribosomal protein L13 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N           ++   EHP     P
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKP 144          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THEMA (50S ribosomal protein L13 OS=Thermotoga maritima GN=rplM PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 55/124 (44.35%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA G+VLGRLA+++A ++ GK KP Y P+ D GD  IV+NA  + +TG+KL  KVYYWH+GY G LK  T ++ +E+ P   I  AV RMLP+N           ++   EHP     P
Sbjct:   21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKVYYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKMLKRLKVYASPEHPHQAQKP 144          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MESSB (50S ribosomal protein L13 OS=Mesorhizobium sp. (strain BNC1) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLA+ VA  ++GK KPT+ P+ DDGD  I++NA  +  TG+K ++K YYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ GSEHP
Sbjct:   14 KWVLIDAEGLVVGRLATIVANRLRGKHKPTFTPHVDDGDNVIIINADKVVFTGKKYQDKTYYWHTGYAGGIKERTARQILEGRFPERVVEKAVERMIPRGPLGRRQMKNLRVYAGSEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BARBK (50S ribosomal protein L13 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rplM PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.206e-25
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+  VLGRLA+ VA  ++GK KPT+ P+ DDGD  IV+NA  + +TG+K  +K YYWHTGYIG +KERT ++ +E R P   I KAV RM+PR            ++ GS+HP
Sbjct:   14 KWILIDAENLVLGRLATLVANRLRGKHKPTFTPHVDDGDNVIVINADKVVLTGKKYTDKKYYWHTGYIGGIKERTARQILEGRFPERIIEKAVERMIPRGPLGRRQMRNLRVYAGSQHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHOP2 (50S ribosomal protein L13 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplM PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25
Identity = 60/128 (46.88%), Postives = 79/128 (61.72%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            +W V DA G V+GRLA+ VA  ++GK  PTY P+ D GD  I++NA  + +TGRK  NKVYY HTG+IG +KERT K  +E R P   + KAV RM+PR            ++PG+EHP     P T+
Sbjct:   14 KWVVIDATGLVVGRLATLVAMRLRGKHLPTYTPHVDCGDNIIIINAAKVVLTGRKRDNKVYYHHTGFIGGIKERTAKSILEGRFPERVVEKAVERMIPRGPLGRVQMGNLRVYPGAEHPHEAQQPETL 141          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DESPS (50S ribosomal protein L13 OS=Desulfotalea psychrophila GN=rplM PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25
Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 3
Query:  204 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            MK  LA +  I  E   W V DA+ +VLGRLAS++A+ ++GK KPT++   D+GD  +V NA+ I +TG+K  +K YY HTGYIG +KE + KE +E+ PT+ I KAV  MLP+N           ++ G+ HP
Sbjct:    1 MKTYLAPVNEIEKE---WYVVDAENKVLGRLASEIASRLRGKHKPTFSSFIDNGDFIVVTNAEKIALTGKKWDDKTYYRHTGYIGGIKETSAKELLEKHPTDLITKAVRGMLPKNKMGRAQLKKLKVYVGAAHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_AGRVS (50S ribosomal protein L13 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rplM PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.057e-25
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+G V+GRLA+ +AT ++GK K TY P+ DDGD  IV+NA+ + +TG+K  +K YYWHTGY G +KERT ++ +E R P   + KAV RM+PR            ++ GS HP
Sbjct:   14 KWVIIDAEGLVVGRLATVIATYLRGKHKVTYTPHVDDGDNVIVINAEKVVLTGKKYTDKTYYWHTGYPGGIKERTARQIIEGRFPERVLEKAVERMIPRGPLGRRQMKNLRVYAGSAHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_KOCRD (50S ribosomal protein L13 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplM PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.509e-25
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA   VLGRLASQ AT+++GK KPT+AP+ D GD  I++NA+ + +TG KL+ K  Y H+GY G LK  +  E +E++PT A+ KA+  MLP+N           ++ G+EHP     P
Sbjct:   14 QWHVIDATDVVLGRLASQTATLLRGKHKPTFAPHVDTGDFVIIINAEKVALTGSKLQKKRAYRHSGYPGGLKSTSYAELLEKNPTRAVEKAIKGMLPKNKLAAQQLSKLKVYAGAEHPHQAQQP 137          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_AQUAE4.428e-2850.0050S ribosomal protein L13 OS=Aquifex aeolicus GN=r... [more]
RL13_THESQ9.234e-2644.3550S ribosomal protein L13 OS=Thermotoga sp. (strai... [more]
RL13_THEP19.234e-2644.3550S ribosomal protein L13 OS=Thermotoga petrophila... [more]
RL13_THEMA9.234e-2644.3550S ribosomal protein L13 OS=Thermotoga maritima G... [more]
RL13_MESSB9.234e-2646.2250S ribosomal protein L13 OS=Mesorhizobium sp. (st... [more]
RL13_BARBK1.206e-2547.9050S ribosomal protein L13 OS=Bartonella bacillifor... [more]
RL13_RHOP22.057e-2546.8850S ribosomal protein L13 OS=Rhodopseudomonas palu... [more]
RL13_DESPS2.057e-2544.7850S ribosomal protein L13 OS=Desulfotalea psychrop... [more]
RL13_AGRVS2.057e-2546.2250S ribosomal protein L13 OS=Agrobacterium vitis (... [more]
RL13_KOCRD3.509e-2544.3550S ribosomal protein L13 OS=Kocuria rhizophila (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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