EY744217

Overview
NameEY744217
Unique NameEY744217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_JASNU (50S ribosomal protein L16, chloroplastic OS=Jasminum nudiflorum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.127e-12
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEKTPPGQSRRKPKGA 785
            +P +  F  +H+G+M G +SRGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K    +S     GA
Sbjct:    3 SPKKTRFRKQHRGRMKGISSRGNYICFGRYALQALE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDKPVTARSTEARMGA 85          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_CUSRE (50S ribosomal protein L16, plastid OS=Cuscuta reflexa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.471e-12
Identity = 39/72 (54.17%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+GKM G + RGN ICFG+YALQ L  P      QIE G +AM RK + RG KFWVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGKMKGISYRGNHICFGKYALQALE-PAWITSRQIEAGRRAMTRKAR-RGGKFWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_SACOF (50S ribosomal protein L16, chloroplastic OS=Saccharum officinarum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMNGKSCRGNHICFGRYALQVLE-PAWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_SACHY (50S ribosomal protein L16, chloroplastic OS=Saccharum hybrid GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMNGKSCRGNHICFGRYALQVLE-PAWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_ORYSJ (50S ribosomal protein L16, chloroplastic OS=Oryza sativa subsp. japonica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSYRGNCICFGRYALQALE-PTWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_ORYSI (50S ribosomal protein L16, chloroplastic OS=Oryza sativa subsp. indica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSYRGNCICFGRYALQALE-PTWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_ORYSA (50S ribosomal protein L16, chloroplastic OS=Oryza sativa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSYRGNCICFGRYALQALE-PTWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_ORYNI (50S ribosomal protein L16, chloroplastic OS=Oryza nivara GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.278e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSYRGNCICFGRYALQALE-PTWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_SORBI (50S ribosomal protein L16, chloroplastic OS=Sorghum bicolor GN=rpl16 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.281e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSCRGNHICFGRYALQVLE-PAWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_MAIZE (50S ribosomal protein L16, chloroplastic OS=Zea mays GN=rpl16 PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.281e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSCRGNHICFGRYALQVLE-PAWITARQIEAGRRAMTRYAR-RGGKIWVRIFPDK 72          
The following BLAST results are available for this feature:
BLAST of EY744217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RK16_JASNU1.127e-1248.2450S ribosomal protein L16, chloroplastic OS=Jasmin... [more]
RK16_CUSRE1.471e-1254.1750S ribosomal protein L16, plastid OS=Cuscuta refl... [more]
RK16_SACOF3.278e-1252.7850S ribosomal protein L16, chloroplastic OS=Saccha... [more]
RK16_SACHY3.278e-1252.7850S ribosomal protein L16, chloroplastic OS=Saccha... [more]
RK16_ORYSJ3.278e-1252.7850S ribosomal protein L16, chloroplastic OS=Oryza ... [more]
RK16_ORYSI3.278e-1252.7850S ribosomal protein L16, chloroplastic OS=Oryza ... [more]
RK16_ORYSA3.278e-1252.7850S ribosomal protein L16, chloroplastic OS=Oryza ... [more]
RK16_ORYNI3.278e-1252.7850S ribosomal protein L16, chloroplastic OS=Oryza ... [more]
RK16_SORBI4.281e-1252.7850S ribosomal protein L16, chloroplastic OS=Sorghu... [more]
RK16_MAIZE4.281e-1252.7850S ribosomal protein L16, chloroplastic OS=Zea ma... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744217 ID=EY744217; Name=EY744217; organism=Citrus sinensis; type=EST; length=951bp
CGCTTCAATTCTCAACTCCAATCGGCTGCTTCTGTCAAAGCGAATTGTAA
ATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCTTAGT
TTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTCAGGC
TAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGCAGCG
AGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACAATCC
GTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGAATCC
AAATCCAAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTCTTTTTCGTTT
CGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAATGACTGGTCTC
CAACAGAAGGTTCTGGATCTTAGTCATATACTAACGGAGACAACAAAATC
ATTATTCCTCGGACACGACACTCAACGCTGGATCTCTGATTATTCACCCG
TGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACGAATAAAGTTT
CCCAAACAAACACAAAGGAAAAATGACGGGAAAAGCCAGTCGAGGAAACC
TAATTTGTTTCGGGAGGTATGCTCTTCAAACCCTTCGAACCCCGCTTGGA
TCTAAGCCTGAACAAATCGAAACGGGGCCCCAAGCAATGGTACGGAAAGG
TAAGCCGCGGGGGGAAAAATTTTGGGTGCGGATTTTCCCCGAAAAAACCC
CTCCCGGGCAAAGCCGGCGAAAACCCAAAGGGGCCCTCCGGGAAGGGATT
CCCGGGGTTACGGGGGGAACCCTTTTTTTACCCCCCGGGTAAAAAATTTT
TTTCAAAAATGTGAGGGAATAACCCAAAAAACATTTGGGCGGGAAAGGGA
TTTTTTGTAAAAAAGGGGGCCCCCCCACAAAGAGGCCCCAATAAAAAAAC
A
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