EY661538

Overview
NameEY661538
Unique NameEY661538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12013 contig Csv1_Contig12013:295..1208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY661538 vs. ExPASy Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.408e-97
Identity = 174/209 (83.25%), Postives = 196/209 (93.78%), Query Frame = 1 
Query:    1 PRVRNALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 627
            P    A+ASEFDVLN GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLT KADAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+TV+ENLPVLATDEKYNEA+Y+TAKRL AAIDGLPD GGP F +NKRESNFKTKEETEEKRGQF+LVVGGLLVIAFVVPMAQYYAY+S+K
Sbjct:   91 PAPAPAVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYISKK 299
[Close]
BLAST of EY661538 vs. ExPASy Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 1.408e-97
Identity = 174/209 (83.25%), Postives = 196/209 (93.78%), Query Frame = 1 
Query:    1 PRVRNALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 627
            P    A+ASEFDVLN GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLT KADAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+TV+ENLPVLATDEKYNEA+Y+TAKRL AAIDGLPD GGP F +NKRESNFKTKEETEEKRGQF+LVVGGLLVIAFVVPMAQYYAY+S+K
Sbjct:   91 PAPAPAVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKDNKRESNFKTKEETEEKRGQFTLVVGGLLVIAFVVPMAQYYAYISKK 299
[Close]
BLAST of EY661538 vs. ExPASy Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 5.917e-96
Identity = 172/207 (83.09%), Postives = 194/207 (93.72%), Query Frame = 1 
Query:    7 VRNALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNENKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSRK 627
            V  ALASEF++LN+GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK   +NFITVRKLT KADAFEYADQVLEKWYPS+EEGNNKGIVVL+TSQKEGA+TGGPAF++AVGE +LDATV+ENLPVLATDEKYNEAVYS+AKRLVAAIDG PD GGP   ++KRESNFKTKEET+EKRGQFSLVVGGLLVIAFVVPMAQY+AYVSRK
Sbjct:   79 VGTALASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLVIAFVVPMAQYFAYVSRK 285
The following BLAST results are available for this feature:
BLAST of EY661538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U603_ORYSJ1.408e-9783.25UPF0603 protein Os05g0401100, chloroplastic OS=Ory... [more]
U603_ORYSI1.408e-9783.25UPF0603 protein OsI_019212, chloroplastic OS=Oryza... [more]
U603_ARATH5.917e-9683.09UPF0603 protein At1g54780, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-034-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661538 ID=EY661538; Name=EY661538; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGCAATGCACTTGCTTCTGAGTTTGATGTGCTCAATGAGGG
CCCACCAAAAGATTCCTATTTAGTTGATGATGCAGGTGTGATTAGTAAAG
TTACAAAATCTGATTTGAAGCAGCTTTTGTCAGATTTGGAGTCGAGGAAG
AACTTCCACATTAACTTCATCACTGTTAGGAAGCTCACTATCAAAGCTGA
TGCTTTTGAGTATGCTGACCAAGTATTAGAGAAGTGGTATCCTAGTGTTG
AAGAGGGCAATAACAAGGGCATTGTTGTGCTAGTTACTAGTCAAAAGGAG
GGGGCAGTCACAGGTGGTCCTGCATTCGTCAAAGCTGTTGGTGAAGAAGT
TCTTGATGCTACCGTAGCTGAGAACCTTCCTGTTTTGGCCACGGATGAAA
AGTACAATGAAGCTGTTTACAGCACTGCTAAACGGCTAGTAGCTGCAATC
GATGGACTTCCTGATACAGGNGGNCCAAAATTTAATGAAAATAAGCGAGA
ATCGAACTTCAAAACCAAGGAAGAGACAGAAGAGAAAAGAGGACAATTCA
GTCTTGTTGTTGGAGGTCTTTTGGTGATTGCTTTTGTTGTTCCAATGGCA
CAATACTATGCGTATGTCTCCAGGAAGTGACTAAAATCTCTGATTTTAGA
TATTTCCAGCTACTTGCTAGAGGGAAAAAAAGAAACCTTGGGAATGCATT
GGTGTACAAATGACTGTGGGAATTAATTGATGAAGAACTGAAATCCGAGG
GTTGTGGAAAATTTTTGCTTTGAATGGATAAAATTGGGAAATTTCCTTAA
AAAAAACAAAAGAACCCAGGGGGGGGGCCCGCCTCCGCCTCCCGGTTTGC
TACTTTACCTTGGCCCGCCCACCCCTCCATTTTCTCATCGTCATTTTCTG
TGCTGCGTCTTGGG
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