EY661529

Overview
NameEY661529
Unique NameEY661529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12099 contig Csv1_Contig12099:77..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY661529 vs. ExPASy Swiss-Prot
Match: CHLG_ARATH (Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.334e-59
Identity = 110/126 (87.30%), Postives = 122/126 (96.83%), Query Frame = 3
Query:   12 LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 389
            LTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWICVGAIDITQ+SVAGYLL +GKPYYALAL+ALI+PQIVFQF+YFLKDP+KYDVKYQASAQPFL+LG+ VTALA+ H
Sbjct:  262 LTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICVGAIDITQLSVAGYLLASGKPYYALALVALIIPQIVFQFKYFLKDPVKYDVKYQASAQPFLVLGIFVTALASQH 387          
BLAST of EY661529 vs. ExPASy Swiss-Prot
Match: CHLG_ORYSJ (Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLG PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 2.972e-59
Identity = 111/126 (88.10%), Postives = 119/126 (94.44%), Query Frame = 3
Query:   12 LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 389
            LTPDI+VLT LYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWICVGAIDITQ+SVAGYL  +GKPYYALALL L +PQ+VFQFQYFLKDP+KYDVKYQASAQPF +LGLLVTALATSH
Sbjct:  251 LTPDIVVLTSLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGMETAKWICVGAIDITQLSVAGYLFSSGKPYYALALLGLTIPQVVFQFQYFLKDPVKYDVKYQASAQPFFVLGLLVTALATSH 376          
BLAST of EY661529 vs. ExPASy Swiss-Prot
Match: CHLG_AVESA (Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.247e-56
Identity = 105/126 (83.33%), Postives = 114/126 (90.48%), Query Frame = 3
Query:   12 LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 389
            LTPDI+VLT LYSIAGLGIAIVNDFKS+EGDR +GLQSLPVAFG ETAKWICVGAIDITQ+SVA YLL  GK YYALALL L +PQ++ QFQYFLKDP+KYDVKYQASAQPF + GLLVTALATSH
Sbjct:  253 LTPDIVVLTCLYSIAGLGIAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWICVGAIDITQLSVAAYLLSTGKLYYALALLGLTIPQVILQFQYFLKDPVKYDVKYQASAQPFFVFGLLVTALATSH 378          
BLAST of EY661529 vs. ExPASy Swiss-Prot
Match: BCHG_CHLAA (Bacteriochlorophyll synthase 34 kDa chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=bchG PE=4 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.665e-15
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 3
Query:    9 PLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTAL 377
            PLT + + + LLYS+   GI  VNDFKS+ GD  MG++S+PV +G   A  + V  + + QI+V G L   G P  A  +  L+  Q +   + F++DP   +V + A+A    + G+L  A+
Sbjct:  185 PLTGESVTIALLYSLGAHGIMTVNDFKSIRGDTIMGIRSIPVQYGKVMAARMVVTTMGVAQIAVIGLLFHWGHPVAATVVAILLAAQSIPNAR-FIRDPENNEVFFNATAIMLYVWGMLAAAI 306          
BLAST of EY661529 vs. ExPASy Swiss-Prot
Match: BCHG_RHOS4 (Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.230e-14
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   24 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA 380
            I+ + LLY+    GI  +NDFK++EGDR  G++SLPV  GPE A  +    + + QI V   L+  GKP +A  + AL+V Q+ F  +  L+DP      Y  +     +LG++V A A
Sbjct:  177 IVTVALLYAFGAHGIMTLNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMAQILVITLLVIWGKPIHAGIITALLVAQL-FAMRVLLRDPAGKCPWYNGTGVTLYVLGMMVAAFA 294          
BLAST of EY661529 vs. ExPASy Swiss-Prot
Match: BCHG_RHOCA (Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus GN=bchG PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.968e-14
Identity = 40/119 (33.61%), Postives = 66/119 (55.46%), Query Frame = 3
Query:   24 IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA 380
            I+++  LY++   GI  +NDFK++EGDR +G++SLP  +GPE A  I    + + Q  V   L    KPY+A A+L L+  Q  +    +++DP      Y  +     + G+++TA A
Sbjct:  181 IVMMATLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTVMGLAQALVITMLYLFSKPYHATAVLVLLCGQF-WAMSVWMRDPEGKAPWYNGTGVVMYVSGMMITAFA 298          
The following BLAST results are available for this feature:
BLAST of EY661529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CHLG_ARATH1.334e-5987.30Chlorophyll synthase, chloroplastic OS=Arabidopsis... [more]
CHLG_ORYSJ2.972e-5988.10Chlorophyll synthase, chloroplastic OS=Oryza sativ... [more]
CHLG_AVESA5.247e-5683.33Chlorophyll synthase, chloroplastic OS=Avena sativ... [more]
BCHG_CHLAA7.665e-1535.77Bacteriochlorophyll synthase 34 kDa chain OS=Chlor... [more]
BCHG_RHOS42.230e-1437.82Bacteriochlorophyll synthase 33 kDa chain OS=Rhodo... [more]
BCHG_RHOCA4.968e-1433.61Bacteriochlorophyll synthase 33 kDa chain OS=Rhodo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-034-B06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661529 ID=EY661529; Name=EY661529; organism=Citrus sinensis; type=EST; length=623bp
CCACGCGTCCGCTTACGCCTGACATAATAGTTCTTACACTCTTGTACAGC
ATTGCTGGGTTAGGTATTGCAATTGTAAATGACTTTAAGAGTGTTGAAGG
AGATAGAGCAATGGGACTTCAGTCACTTCCAGTAGCTTTTGGTCCTGAAA
CTGCTAAATGGATTTGTGTTGGTGCAATTGACATAACTCAGATATCTGTG
GCTGGTTATTTACTAGGGGCTGGTAAACCATATTATGCCCTAGCGCTACT
AGCCTTGATAGTGCCACAAATCGTCTTTCAGTTCCAGTACTTTCTCAAAG
ACCCTATAAAATACGACGTTAAATATCAGGCAAGTGCCCAGCCGTTTTTG
ATACTTGGCTTGCTTGTGACTGCTCTAGCAACAAGCCACTGATATTCTGA
AGCAGTCTCTTTTTATGCAACACATGGAAGCAAAACGAAACAGGGAGATA
CAGGAAGATTGGGGTAGTTATGCAACAATTTTGTTTGCTTTGTAACGGAA
CAGCTTTTGGCAGAAGTAGCAAGTTTATCACGGTTGGTTGTAATGTATTA
GTGTGGCACCTACTCGCAGAAACTTTTTTTTTTTAATTTGGGGTATAATC
AAACCATTTTGGGATTNNNNNNN
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