EY661526

Overview
NameEY661526
Unique NameEY661526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE3_PONAB (Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.272e-51
Identity = 118/226 (52.21%), Postives = 147/226 (65.04%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCF--NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANR-GQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNG-EISVVQALLAELPFSFLTYMXTXDIHP 674
            PR PDSLHY+ P+G  N Y  A+  VG V+Q YD+DK FPA+GFGA+ P    VSH F  N N SN YC   GI GI+ AY S L  + L GPT F P+I++ A  A  +   +   +YFVLLIITDGV+TDL ET+ A+V AS LP+SI+I+GVGGADF  ME LD D G  L S +G VA RDIVQFVP R  QN  + ++ Q +LAE+P   + Y  T  + P
Sbjct:  305 PRSPDSLHYISPNG-VNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCN--GIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAAAQQQTASQYFVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGD-GGGLRSPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLP 526          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE3_HUMAN (Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.272e-51
Identity = 118/226 (52.21%), Postives = 146/226 (64.60%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCF--NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANR-GQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNG-EISVVQALLAELPFSFLTYMXTXDIHP 674
            PR PDSLHY+ P+G  N Y  A+  VG V+Q YD+DK FPA+GFGA+ P    VSH F  N N SN YC   GI GI+ AY S L  + L GPT F P+I++ A  A  +   +   +YFVLLIITDGV+TDL ET+ A+V AS LP+SI+I+GVGGADF  ME LD D G  L S  G VA RDIVQFVP R  QN  + ++ Q +LAE+P   + Y  T  + P
Sbjct:  305 PRSPDSLHYISPNG-VNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCN--GIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNASRLPMSIIIVGVGGADFSAMEFLDGDGGS-LRSPLGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLP 526          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE1_HUMAN (Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.618e-50
Identity = 115/219 (52.51%), Postives = 153/219 (69.86%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCF--NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANRG--QKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNG-EISVVQALLAELPFSFLTY 650
            P  PDSLHYL P+G  N Y  A+  VG V+Q YDSDK FPA+GFGA+ P D  VSH F  N N SN YC   GI GI+ AY  AL  V L GPT F P+I++ A  A Q+ A++G   +YF+LL++TDG VTD++ T++A+V+AS+LP+S++I+GVGGADF+ ME LDAD G  L + +G+ A+RDIVQFVP R  QN    ++ Q +LAE+P   ++Y
Sbjct:  299 PSSPDSLHYLSPTG-VNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCA--GIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQA-AHQGTASQYFMLLLLTDGAVTDVEATREAVVRASNLPMSVIIVGVGGADFEAMEQLDADGGP-LHTRSGQAAARDIVQFVPYRRFQNAPREALAQTVLAEVPTQLVSY 512          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE3_MOUSE (Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.725e-50
Identity = 115/226 (50.88%), Postives = 146/226 (64.60%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCF--NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANR-GQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNG-EISVVQALLAELPFSFLTYMXTXDIHP 674
            P  PDSLHY+ P+G  N Y  AI  VG V+Q YD+DK FPA+GFGA+ P    VSH F  N N SN YC   GI GI+ AY + L  + L GPT F P+I++ A  A  +   +   +YFVLLIITDGV+TDL ET+ A+V A+ LP+SI+I+GVGGADF  ME LD D G  L + +G VA RDIVQFVP R  QN  + ++ Q +LAE+P   + Y  T  + P
Sbjct:  305 PSSPDSLHYISPNG-VNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCN--GIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNAAKLPMSIIIVGVGGADFSAMEFLDGDGGS-LRAPSGEVAIRDIVQFVPFRQFQNAPKEALAQCVLAEIPQQVVGYFNTYKLLP 526          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE1_MOUSE (Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.063e-49
Identity = 115/218 (52.75%), Postives = 145/218 (66.51%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCF--NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANRG-QKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNG-EISVVQALLAELPFSFLTY 650
            P  PDSLHYL P+G  N Y  A+  VG V+Q YDSDK FPA+GFGA+ P D  VSH F  N N SN YC   GI GI+ AY  AL  V L GPT F P+I++ A  A Q+   R   +YFVLL++TDG VTD++ T  A+V AS LP+S++I+GVGGADF+ ME LDAD G  L + +G  A+RDIVQFVP R  QN    ++ Q +LAE+P   ++Y
Sbjct:  298 PSSPDSLHYLSPTG-VNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCA--GIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAQQRSASQYFVLLLLTDGAVTDVEATCKAVVDASKLPMSVIIVGVGGADFEVMEQLDADGGP-LRTRSGEAAARDIVQFVPYRRFQNAPRETLAQTVLAEVPTQMVSY 511          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE2_MOUSE (Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.164e-48
Identity = 108/227 (47.58%), Postives = 151/227 (66.52%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCF--NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANR-GQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQN-GEISVVQALLAELPFSFLTYMXTXDIHPS 677
            P  P SLHY++P G  N Y  AI  VG+++Q YDSDK FPA GFGA+ P D  VSH F  N N +N +C   G+ GI  AY++ L ++   GPT F P++++ A  A Q+   +   +YF+LLIITDGV++D++ET+ A+V+AS LP+SI+I+GVG ADF  ME LD D   RL S TG  A+RDIVQFVP R+ +N  + ++ +A+LAELP   + Y    ++ P+
Sbjct:  321 PLDPSSLHYINPMGT-NEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCS--GVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQQTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGD-NRRLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPT 543          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE2_HUMAN (Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.985e-48
Identity = 108/227 (47.58%), Postives = 150/227 (66.08%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCF--NLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANR-GQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQN-GEISVVQALLAELPFSFLTYMXTXDIHPS 677
            P  P SLHY++P G  N Y  AI  VG+++Q YDSDK FPA GFGA+ P D  VSH F  N N +N +C   G+ GI  AY++ L ++   GPT F P++++ A  A Q+   R   +YF+LLIITDGV++D++ET+ A+V+AS LP+SI+I+GVG ADF  ME LD D    L S TG  A+RDIVQFVP R+ +N  + ++ +A+LAELP   + Y    ++ P+
Sbjct:  321 PLDPSSLHYINPMGT-NEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCS--GVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQRTATQYFILLIITDGVISDMEETRHAVVQASKLPMSIIIVGVGNADFAAMEFLDGD-SRMLRSHTGEEAARDIVQFVPFREFRNAAKETLAKAVLAELPQQVVQYFKHKNLPPT 543          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE8_MOUSE (Copine-8 OS=Mus musculus GN=Cpne8 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 9.853e-48
Identity = 115/232 (49.57%), Postives = 152/232 (65.52%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGS--NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANRGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDL--QNGE-----ISVVQALLAELPFSFLTYMXTXDIHPS 677
            P  P SLHY++P  + NAY  A+  VGE++Q YDSDK FPA GFGA+ P DG +SH F LNG+  N YC+  GI G+M AY  +L +V L GPT F PVI++ A  A  S    G +YFVLLI+TDGV++D+ +TK+++V AS LP+SI+I+GVG A+F  M  LD D  +   SS G+ A RDIVQFVP RD   ++G        + + +LAE+P  FL+YM    I PS
Sbjct:  323 PAQPTSLHYMNPY-QLNAYGMALKAVGEIVQDYDSDKMFPALGFGAKLPPDGRISHEFALNGNPQNPYCD--GIEGVMEAYYRSLKSVQLYGPTNFAPVINHVARYA--SSVKDGSQYFVLLIVTDGVISDMAQTKESIVNASKLPMSIIIVGVGPAEFDAMVELDGD--DVRVSSRGKYAERDIVQFVPFRDYIDRSGNHILSMARLAKDVLAEIPEQFLSYMRARGIKPS 547          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE8_HUMAN (Copine-8 OS=Homo sapiens GN=CPNE8 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 9.853e-48
Identity = 115/232 (49.57%), Postives = 152/232 (65.52%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGS--NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANRGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDL--QNGE-----ISVVQALLAELPFSFLTYMXTXDIHPS 677
            P  P SLHY++P  + NAY  A+  VGE++Q YDSDK FPA GFGA+ P DG +SH F LNG+  N YC+  GI G+M AY  +L +V L GPT F PVI++ A  A  S    G +YFVLLI+TDGV++D+ +TK+++V AS LP+SI+I+GVG A+F  M  LD D  +   SS G+ A RDIVQFVP RD   ++G        + + +LAE+P  FL+YM    I PS
Sbjct:  323 PAQPTSLHYMNPY-QLNAYGMALKAVGEIVQDYDSDKMFPALGFGAKLPPDGRISHEFALNGNPQNPYCD--GIEGVMEAYYRSLKSVQLYGPTNFAPVINHVARYA--SSVKDGSQYFVLLIVTDGVISDMAQTKESIVNASKLPMSIIIVGVGPAEFDAMVELDGD--DVRVSSRGKYAERDIVQFVPFRDYIDRSGNHILSMARLAKDVLAEIPEQFLSYMRARGIKPS 547          
BLAST of EY661526 vs. ExPASy Swiss-Prot
Match: CPNE7_MOUSE (Copine-7 OS=Mus musculus GN=Cpne7 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.890e-47
Identity = 106/224 (47.32%), Postives = 146/224 (65.18%), Query Frame = 3
Query:   12 PRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAA-LIAGQSLANRGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLRDLQNGE-ISVVQALLAELPFSFLTYMXTXDIHP 674
            PR   SLH+++P  +PN Y RA++ VGEV Q YDSDKRF A GFGAR P    VSH F +N +    E EGI G++ AY + L  V L GPT   P+IS  A + A +       +Y++LLI+TDGVVTD+ +T++A+V+AS LP+S++I+GVG ADF +M+ILD D G  L S  G  A RDIVQFVP R+L+N    ++ + +LAE+P   + Y    ++ P
Sbjct:  320 PRNSCSLHHINPY-QPNEYLRALVAVGEVCQDYDSDKRFSALGFGARIPPKYEVSHDFAINFNPEDDECEGIQGVVEAYQNCLPKVQLYGPTNVAPIISKVARMAAAEESTGEASQYYILLILTDGVVTDMSDTREAIVRASHLPMSVIIVGVGNADFTDMQILDGDDGV-LRSPRGEPALRDIVQFVPFRELKNASPAALAKCVLAEVPKQVVEYYSHKELPP 541          
The following BLAST results are available for this feature:
BLAST of EY661526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CPNE3_PONAB3.272e-5152.21Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1[more]
CPNE3_HUMAN3.272e-5152.21Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1[more]
CPNE1_HUMAN3.618e-5052.51Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1[more]
CPNE3_MOUSE4.725e-5050.88Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2[more]
CPNE1_MOUSE3.063e-4952.75Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1[more]
CPNE2_MOUSE1.164e-4847.58Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1[more]
CPNE2_HUMAN1.985e-4847.58Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3[more]
CPNE8_MOUSE9.853e-4849.57Copine-8 OS=Mus musculus GN=Cpne8 PE=2 SV=2[more]
CPNE8_HUMAN9.853e-4849.57Copine-8 OS=Homo sapiens GN=CPNE8 PE=1 SV=2[more]
CPNE7_MOUSE4.890e-4747.32Copine-7 OS=Mus musculus GN=Cpne7 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-034-B03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661526 ID=EY661526; Name=EY661526; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGCCCCGTCTCCCTGATTCCTTGCATTATCTTGATCCCTCA
GGCCGGCCAAATGCATATCAAAGAGCAATCCTAGAGGTCGGAGAGGTATT
GCAGGTTTATGACTCTGATAAGCGCTTTCCTGCATGGGGTTTTGGGGCAA
GACCAATCGATGGTCCTGTCTCACATTGTTTCAACTTGAATGGAAGCAAT
AGTTACTGTGAGGTTGAAGGAATCCCTGGAATTATGATGGCATATACAAG
TGCTCTCCATAATGTAAATCTTGCTGGGCCTACACTATTTGGACCTGTCA
TCAGCAATGCTGCACTTATTGCTGGCCAGTCTCTTGCCAACCGTGGACAA
AAATACTTTGTTTTGTTGATAATAACGGATGGAGTAGTAACGGATCTGCA
AGAAACGAAGGATGCCTTAGTGAAAGCATCTGACCTTCCGCTGTCAATTC
TCATCATAGGAGTTGGAGGAGCTGACTTCAAAGAAATGGAGATTCTAGAT
GCTGACAAGGGAGAGAGGCTTGAAAGTTCAACTGGTCGTGTTGCTTCGCG
TGATATAGTTCAATTTGTTCCTCTCAGGGATTTACAGAATGGAGAGATTT
CTGTGGTTCAAGCACTTTTAGCAGAATTGCCTTTCTCATTTTTAACTTAC
ATGCNGACCANAGATATCCACCCAAGTACTTGATTTGTGTAAAAGATGTA
CATATGAATAGTATTTTCTATCACTGGCTTTCATGCCATAAAGTTTGCAG
TCTTGTCTTTCATCGTACCAATGCCCACAGTTTCTAAGGGTTTGATCAGG
CCTCTTCATTTAGTCGAAAATGATACNTCATCATGCCTATCTGAGAAACC
GGGGATGTGCGTATTGCATTGCGGAAAATTTTATCAGGGGGTGC
back to top