EY661525

Overview
NameEY661525
Unique NameEY661525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY661525_ssr418 microsatellite EY661525_ssr418:418..429. BLAST: Citrus ESTs to Prunus persica proteins V1
EY661525_ssr506 microsatellite EY661525_ssr506:506..517. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY661525 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.893e-30
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 2
Query:  131 TINSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 355
            T N+     Y    IDCGGAC ARCRLSSRP LC+RACGTCCARCNCVPPGT+GNTE CPCYA++TTH  +RKCP
Sbjct:   30 TSNAISEAAYSYKKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of EY661525 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.507e-28
Identity = 54/73 (73.97%), Postives = 57/73 (78.08%), Query Frame = 2
Query:  137 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 355
            NS K  GY K  IDCG AC ARCRLS RP LCHRACGTCC RCNCVPPGT GN + C CYA++TTH GRRKCP
Sbjct:   27 NSQKKNGYAK-KIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of EY661525 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.938e-24
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  137 NSSKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 355
            +S  G G  K  IDCGG C+ RC  SSRPNLC RAC +CC RCNCVPPGTAGN  +CPCYA++TT  GR KCP
Sbjct:   29 DSQVGEGVVK--IDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of EY661525 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.525e-23
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  128 HTINSSK-GTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 355
            H  + +K G G  K  IDCGG C+ RC  SSR  LC RAC +CC+RCNCVPPGT+GNT +CPCYA++TTH GR KCP
Sbjct:   25 HAADGAKVGEGVVK--IDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of EY661525 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 32/71 (45.07%), Postives = 38/71 (53.52%), Query Frame = 2
Query:  143 SKGTGYPKPSIDCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 355
            S+G  +P+   DC   C  RC  +S    C   C  CCA+C CVP GT GN + CPCY N  T  G  KCP
Sbjct:   45 SEGRLHPQ---DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of EY661525 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 28/60 (46.67%), Postives = 31/60 (51.67%), Query Frame = 2
Query:  176 DCGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 355
            DC   C  RC  +S    C   C  CCA C CVP G  GN + CPCY N  T  G+ KCP
Sbjct:   37 DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of EY661525 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 2
Query:  179 CGGACQARCRLSSRPNLCHRACGTCCARCNCVPPGTAGNTEVCPCYANMTTHHGRRKCP 355
            C   C+ RC  +   + C + CG CC  C CVP GT GN   CPCY +     G+ KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
The following BLAST results are available for this feature:
BLAST of EY661525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SNAK2_SOLTU4.893e-3072.00Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH3.507e-2873.97Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA3_ARATH8.938e-2465.75Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GASA2_ARATH1.525e-2362.34Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GAST1_SOLLC2.982e-1145.07Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC5.087e-1146.67Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
SNAK1_SOLTU6.644e-1142.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-034-B02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661525 ID=EY661525; Name=EY661525; organism=Citrus sinensis; type=EST; length=619bp
TTGCTCGACCCACGCGTCCGGAGAAGCAGACTCTAAGCATAACTAATTGT
AAGCCATGGCCATCTCCAAAGCTCTTATTGCTTCAGTCCTCCTCTCACTT
GTTGTTTTTCATCTCGTTGAAGCTGAGCATACGATTAACTCAAGCAAAGG
AACTGGTTATCCAAAACCATCAATTGACTGTGGAGGTGCATGCCAGGCCA
GGTGCCGATTATCGTCGAGGCCAAACCTGTGCCACAGGGCATGTGGTACC
TGCTGCGCCCGCTGCAATTGTGTTCCTCCAGGCACTGCAGGCAACACTGA
GGTCTGCCCTTGCTACGCCAATATGACCACCCACCACGGCAGACGCAAGT
GCCCTTGAAATATTTTAAGTTGAAACGACGTCGTCTACTTCTTAATTAAT
TTTTTTGGAGCTTCTATTCTCTCTCTCTCTATGTATAAATATGTGCGTGT
GCGTGTGCCTGTGTTGCCTGTGGCCAGAAAAACANAAGTGATCCATATTC
CCATGAATAAATAAATAAATCCCTTTCATGTTACTTATTGTGGATACATA
AGTTTCCCAGAGATAATAATAAGAAGCTTCCTCTCCTTTTAAAATTGTAA
AAAAAAAAAAAAAAAAAAA
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