EY661492

Overview
NameEY661492
Unique NameEY661492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY661492_ssr211 microsatellite EY661492_ssr211:211..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7663 contig Csv1_Contig7663:1..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY661492 vs. ExPASy Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 2 
Query:   86 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 289
            MGVFT+VC+  GG WS KQ EG +LE+SA+STYELQRKLVQ SLSADSSGGVQSSFSLV+PTSAVFQV
Sbjct:    1 MGVFTFVCKNGGGAWSAKQHEG-ELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSPTSAVFQV 67
[Close]
BLAST of EY661492 vs. ExPASy Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 2 
Query:   86 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 289
            MGVF++VC+  GGEW+ KQ EG DLEASA+STY+LQRKLVQT+LSADSSGGVQSSFSLV+PTSAVF V
Sbjct:    1 MGVFSFVCKSKGGEWTAKQHEG-DLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSPTSAVFVV 67
[Close]
BLAST of EY661492 vs. ExPASy Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.358e-20
Identity = 56/121 (46.28%), Postives = 68/121 (56.20%), Query Frame = 2 
Query:   86 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDEDMGFSLFD 448
            MGV+T+VCR NGGEW+ KQ   G++EASAA+ YELQR+LV  + +ADS  GVQSSFS+VTP+SAVFQV                                          SD+DMGFSLFD
Sbjct:    1 MGVYTFVCRNNGGEWTAKQ-HSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTPSSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGAAAEAPKEEKKEEEKEESDDDMGFSLFD 120
[Close]
BLAST of EY661492 vs. ExPASy Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 3.764e-18
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 2 
Query:   86 MGVFTYVCRKNGGEWSGKQIEGGDLEASAASTYELQRKLVQTSLSADSSGGVQSSFSLVTPTSAVFQV 289
            MGV+T+VCR +G EW+ KQ++G +LEASAA+ YELQR+LV  + +ADS+ GVQSSFS+V+P+SAVFQV
Sbjct:    1 MGVYTFVCRSSGDEWTAKQLKG-ELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSPSSAVFQV 67
The following BLAST results are available for this feature:
BLAST of EY661492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RLA31_ARATH6.629e-2380.8860S acidic ribosomal protein P3-1 OS=Arabidopsis t... [more]
RLA32_ARATH1.131e-2279.4160S acidic ribosomal protein P3-2 OS=Arabidopsis t... [more]
RLA3_MAIZE2.358e-2046.2860S acidic ribosomal protein P3 OS=Zea mays GN=RPP... [more]
RLA3_ORYSJ3.764e-1864.7160S acidic ribosomal protein P3 OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661492 ID=EY661492; Name=EY661492; organism=Citrus sinensis; type=EST; length=665bp
TTCGTCGACCCACGCGTCCGGAGCCGTCGTCTCTGTTTATCTAGTACATT
GTGCCGCTCAAAGACAAAAAGAATATCAAGTGAAAATGGGAGTTTTCACA
TACGTGTGCAGAAAAAATGGGGGAGAATGGAGCGGAAAGCAGATAGAGGG
GGGAGACTTAGAAGCCTCTGCAGCATCAACATACGAGCTCCAGAGAAAGC
TGGTCCAGACCTCTCTCTCTGCTGATTCTTCTGGTGGGGTCCAGTCCTCT
TTCTCCCTCGTCACACCTACGTCTGCTGTTTTCCAGGTGATTATTGGTGG
TGCTGTTGGTAGTGGTTTCATTGGAGGTGGAGCTGCAGCTTCAGCCCCTT
CAGGAGGCGGTGGAGCAGCTGCTGAGGCTCCTGCTGCTGAGGAGAAGAAG
GAAGAGAAAGAGGAGAGTGATGAAGACATGGGTTTCTCTCTTTTTGATTA
GGTTATATAATTCCAGTTCTCTTCTTGGGACTTGTATTTTGTTATGCTTT
TATGTCGACTCAAAAATTGCTCTGCCATTGGCTTAGATTTTATTTTTGTG
AGAGTTTTGTTACTTTGTGAGGGATTTTTGTCCACCATCAATATTAAGTA
AACATGATTAGCTTGCTGCTCCATGTCTATTACCAGACCTTTTTCATTTT
AAAAAAAAAAAAAAA
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