EY661486

Overview
NameEY661486
Unique NameEY661486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.028e-28
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIA 706
            G V   HS   + +KL  A    RLV + FTATWCGPCR I P+F  L+ K+ ++ FLKVD+DE RDVA  W++ ++PTF FIK+GK VDKVVGA K  LERK+A
Sbjct:    4 GNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVA 108          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.559e-27
Identity = 54/109 (49.54%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 718
            G V+  H+  EF+ ++  A  A ++VI+ FTA+WCGPCRFI+P+F   A K+   VFLKVD+DE ++VA ++N+ ++PTF FIK+G E DKVVGA K  L+  I +H G
Sbjct:    6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.559e-27
Identity = 54/109 (49.54%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAG 718
            G V+  H+  EF+ ++  A  A ++VI+ FTA+WCGPCRFI+P+F   A K+   VFLKVD+DE ++VA ++N+ ++PTF FIK+G E DKVVGA K  L+  I +H G
Sbjct:    6 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKHVG 114          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 52/108 (48.15%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 715
            GQV G H   E+           +LV++ FTA+WCGPCRFI+P+  ++A K   V+FLKVD+DE + V+  W++ ++PTF FIK+GKEVD+VVGA K  L++ I +HA
Sbjct:   12 GQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA 119          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.788e-25
Identity = 54/107 (50.47%), Postives = 73/107 (68.22%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 712
            GQV+  H+   +  +L  A  +  LV++ FTA+WCGPCRFI+P F +LA K   V+FLKVD DE + VA+ W I ++PTF F+K GK +DKVVGA K  L+  IA+H
Sbjct:    6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.795e-25
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 712
            GQV+G H+   +  +L        L+++ FTA+WCGPCRFI+P    LA K   V FLKVD+DE + VA  W + S+PTF F+K GK +DKVVGA K  L++ IA+H
Sbjct:    6 GQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.795e-25
Identity = 51/107 (47.66%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQH 712
            GQV+G+H+   +   L       +L+++ FTA+WCGPC+FI+  +  LA K   V FLKVD+DE + VAT W + ++PTF F+K GK VDKVVGA K  L++ IA+H
Sbjct:    5 GQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 3.372e-24
Identity = 48/110 (43.64%), Postives = 76/110 (69.09%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHAGQ 721
            G+V+ +HS  ++  ++  A  A +LV++ FTA+WCGPCR ++P+F +LA K+   VFLKVD+DE + +A ++++ ++PTF F+K G   D+VVGA K  L  K+  HA Q
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHAAQ 127          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 715
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
BLAST of EY661486 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.674e-23
Identity = 47/108 (43.52%), Postives = 75/108 (69.44%), Query Frame = 2
Query:  392 GQVMGIHSASEFETKLNAATRALRLVILYFTATWCGPCRFISPLFTNLASKYTKVVFLKVDIDEARDVATRWNIGSVPTFFFIKNGKEVDKVVGADKSALERKIAQHA 715
            G+V+  H+  ++  KL AA  + +L+++ FTA WC PCRFI+P+F  LA K+  VVF KVD+DE   VA  +++ ++PTF ++K  +++DKVVGA K  +E K+ +H+
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHS 118          
The following BLAST results are available for this feature:
BLAST of EY661486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
TRXH_PICMA5.028e-2855.24Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ5.559e-2749.54Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI5.559e-2749.54Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH1_TOBAC9.482e-2748.15Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH1_ARATH1.788e-2550.47Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_RICCO6.795e-2548.60Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC6.795e-2547.66Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_WHEAT3.372e-2443.64Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_BRARA1.674e-2343.52Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL1.674e-2343.52Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-033-F09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661486 ID=EY661486; Name=EY661486; organism=Citrus sinensis; type=EST; length=886bp
CAGATATTAAATCTTCCTACAAATTTTACTTGTTAGAAATTTCTCTACTA
CTGTTACTTTTGTTTTCAACAATCATTTTTTTTGTCTTTCTCTTGTCCAT
AATCATTTGTTCTTGTGGTTATTTTTTTCTGGGGCAGTTCAAATTTTTCA
CAAGTTCTCCTTAGAAGAGCTGTCAATGTTTCTGACCTTTGTTATGTTGG
AACAGACTGAGGATTCCAGGCCTTCTAATGTTTGGATTTTTACTATTAAT
CTTCTCAGGCTTTTATTTGTTTAATAATCTCTTAATCTCTCCATTTTAGA
GCTATTGATGTCTAAAGTAGATAGGTATATTCATGGTGTTCCTATGATGA
TTTCCCTGTTGTGTATCTTGTTACATTTTTGGTGATCCACAGGGCAAGTA
ATGGGTATTCACTCAGCTAGTGAATTTGAAACTAAGTTGAATGCTGCTAC
TAGAGCATTGCGCCTGGTGATTCTGTACTTTACTGCAACATGGTGCGGGC
CCTGCCGTTTCATTTCTCCTCTTTTTACAAACTTAGCCTCAAAATACACG
AAGGTTGTTTTCTTGAAAGTTGACATAGATGAGGCAAGAGATGTAGCTAC
ACGCTGGAATATTGGTTCTGTTCCCACCTTTTTCTTCATAAAGAATGGTA
AGGAAGTTGACAAGGTTGTCGGGGCTGATAAAAGTGCACTTGAAAGGAAG
ATTGCACAACATGCTGGCCAGTAAAACCACTCCTGAATAATGAGAACTTT
AGAGTAATCTCTGCTTGCAAGCCTTTCCTACCCATTTGTTTGCAAGCAAA
TAATGTCTGANTAAATTCAGTATTTGAATAAAATAACTTGCTCCAAAATT
ATCNNTCATTCTTGCTATGNTTACCGAGTAAAGAAT
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